G524074 (LOC102208280)


Basic Information

Item Value
gene id G524074
gene name LOC102208280
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56140696 ~ 56142206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU594000
CGTGCTGACCACCTCCTGCATCTTGGCACGGCCCAGGTCCAGGAAGCTCTCGATGAGGTCCCCGTCGATGAAGCCCGTGGCCTGCTCAGTCTTACGCTCTGTATGGAAGGACCTCCAGAAGCTGTGCTCGATCTTGCCCACGCTCTTGATGACCTTGTTGAGTCGGTTCTGCAGGTCCAGCAGCAGGCTATACCAGCCCTCGGACAGAGAGGTCACAAGACCTAGAGACATAAGACAGATGGCATGTCATTTATGGGAGAAAAGAAAAAGGAGAACCGAAATGGATGA

Function

NR:

description
DNA damage-binding protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU594000 True 288 lncRNA 0.55 2 56140696 56142206

Neighbor

gene id symbol gene type direction distance location
LOC110526175 LOC106587084 coding upstream 19949 56020625 ~ 56120747 (+)
LOC110526173 LOC106587080 coding upstream 151242 55982270 ~ 55990919 (+)
LOC110526171 LOC106587080 coding upstream 159792 55971440 ~ 55980904 (+)
LOC110526172 LOC106561172 coding upstream 172605 55965222 ~ 55968091 (+)
LOC110526169 LOC106587076 coding upstream 224615 55904064 ~ 55916081 (+)
LOC110526177 LOC106587086 coding downstream 42926 56185132 ~ 56234100 (+)
LOC110525039 NA coding downstream 179497 56321703 ~ 56328003 (+)
nr1h3 nr1h3 coding downstream 190499 56332705 ~ 56357630 (+)
LOC110526181 madd coding downstream 219825 56362031 ~ 56445865 (+)
LOC110526184 LOC106587093 coding downstream 411644 56553850 ~ 56562955 (+)
G524073 NA non-coding upstream 218 56139929 ~ 56140478 (+)
G524069 NA non-coding upstream 12875 56127519 ~ 56127821 (+)
G523959 NA non-coding upstream 170536 55969438 ~ 55970160 (+)
G524139 NA non-coding downstream 136042 56278248 ~ 56281973 (+)
G524199 NA non-coding downstream 182731 56324937 ~ 56325170 (+)
G524303 NA non-coding downstream 442070 56584276 ~ 56589481 (+)
G524371 NA non-coding downstream 534903 56677109 ~ 56756337 (+)
LOC110526167 LOC106587078 other upstream 574197 55563439 ~ 55568167 (+)
G523529 NA other upstream 656089 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1199823 54793125 ~ 54954478 (+)
G525645 NA other downstream 1433878 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1461902 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1479642 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1497268 57639437 ~ 57642487 (+)
G525912 NA other downstream 1561252 57703458 ~ 57710340 (+)

Expression


Co-expression Network