G524139


Basic Information

Item Value
gene id G524139
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56278248 ~ 56281973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU594074
GACCAAAAACATCGGTATTTTATCACATTTGGACTGTAGGAATATTATAACATCCTGAAATACACTTCTACGGAGTTGTTTTAATATCAACTTTAAGAGACAGTTCTATTTTGATTTCGCTCCCTTAATGACCCTCCAGTGTTCATGAAAATGAATggttcaaatacacacacatactcggACAGCATGAACATTTCGTTACATTTGAACAGAAAAATAACCCATGTCATTTCCATGTGGATGTTCATGGCAAACGTACTTAgtgatggtacaatgattccatGGCTGAAACATATTACTGTaaccaaaacatacacacacacacacacacacatacacacacaccacatatgctgctgctactgtgtattatctatcctgttgcctaaatcactttaaccctacctatatgtacagcacatgcctacctcaattaccttgtacctctgcacatcgactcggtacaggtactccctgtatatagccatgttgtttttatttgttattcactgtgtatttattccttgtgtcactatttaaatgttgtattacatatatttttaatctttaactgcattgttggaaatgaacgcgtaagtaagcatttcacagttagTCAACACATGTTGTCTACGAAGCGTGTGAAAAATAAAACTGGATTTGATTTGTTTATGTATGTTATATTCATATATACAATGGACCCTTAGTGGCTACCCAATCTATACCCAAGAAGGCACAACTTTAAAATGTACACAATAGTTAAACATGTCATTATAATGATTTTCAAGTTGTgaacttgatttgatttgtatatgTTTGTTATATTTGGGGCCGTATGTATCAAGCATGTCAGAGTAGGAGTGCCGATAAAGGATcggttttgccttttagatcaacAATGAATAAGATAAACTGGACAGGGGaattgatcctagatcagcactcttgaGACACTTCGCGTGAACAACAGGTTAGTGTTCaaagacagaccagctatagtTGTCCATTTTCTGGACCTTTTCACTGTAACTAGGCACACCTTGAAGCAGGCCTCATGTCTATACTAAAGATGCGTCTAGATACTGTGGGCAGGGCTAAGCCCCATTTTTGATATTAGGGCATTGTGAAAAGCCTTTTCATTGACTTTGTCTTTTCAGTTCAATCACAGTCCATCCATCACCATAATATGTTACCATAATGTAGTCAAATATCATTGTTGTGGTCTTGAGGCTACACAGGCTATACGGATGACTTAGAATGgctttttgtattattttttttacagtctcATCATTATGCGTAGTGCTTTAGGCCGGGACATAACACTGATTGATATTGTCAAAAGAAGCCATCCCTTCGGAGTTATACTACGGATTGGGTAGATAACTAGGGAGAAGGTCAGCTTTGCTAACAGTATACAGTATCTAACAGTATAGAAACATTGTAATATCCTAGAAAAACTTGATGTTGAAAGATACCTCTTTCTCTTTGTTTTCCCTTAAGTCATTGCTTATTCAACTACATTTTGGGAATCCAGAGTATTTTAGCTTCACTATGGCAAGACACAACAACTTCTTGCTAGGCACACCTAAATGATACCATTAACTGCTGAGGGATTTAGCCTTAAACTATTACACTTTGACAGACATCAATTATCAGGATGTGCATGGGCTTTGTGTTTGCTTCAAAATGTAATTTCTGCAATCACTGGTAAATAACCAGTGATGCTTAAAGAATTTGATAACAAAGTACATTTTAGCAGAGGCTAGCATGGTATATTTGATAGGGTTTTCTGAACGTTGAGGAAAATCTTGACCACAAATATTTTGTAATAGAGGAATATAGCGTAACCAATAAGAATAGACATGTATAtggagtagtggtggtggggggtatAATTAGGATTTTCTATGTAAGCAGATGAAGAACAGACACTGATATGAGAGCACTTTTCATCTCCAGATTCAAGTGTTCTATGTCTTTTCAGACAGTACAATGAAATATGTATGTTGTCTTTTTATGGAAGAGAATGGAAATGCAGTCCATTGTCTATGTCAATAATACTGTACATAATATTAGGTTCCACCCCTTTCAATAACATAAAAAGAATAAAGAACTCTGGTGTTGTTGGTGCCCTGAAGGTCATCATGGGCCGACATCACAATAATAGACAGCACGCCCAGGAGCGAGAATTACTAAGTTCTTGGCTGTTGACTGAACGTAAGAAGGATGGGCTTAAACATAAGCTGGCATTTATGTTTTAAAAAAAGCAAACACTTGATTTGTCTGACAAAGCTGCAACAAGCAAGCAGTGCATACAACTATGTGTCTTTGAAAGCAGACCAAAAGAGAGCGGGCGGATGTTCTACGAGCAGTTATATGAGAACAGCACAATAAGAAACTCaattgaaaaatctcaaatctaaatTGAAGGGCAAAATCACGGATCTTGTTGGAGCAgcatccacaacatgttcaaggTTCATGTAAATAAAAATGGAACACGTCTTCTGAAGATATGAACATTGTTAACAGTCAAACTAAGTAGAATTGTCTCAAATGTCATGATTTGCGACACATTGTTGGACACAGAAATATAAACATCGGCATATGTTCTATTCAATGTGTATCTATTTTCACAACATCTCCAGAGGAAGTGTACACCACGTACAATAAAATCAGGGTTTAAACTTTGGTTAAGTAATAGTCAAGgctaggtttaaaaaaatatataacacacATCCATGTTACTTTGCATACAGTTAACTTTAAATGGATCGAGGTTTGTGTCAACAAAGCAGCTGGTCAATTATATCACTAACATAATAAAATTTGCATCTTAGGGAAAACCCTTTGTGTCCCTTCGGTAGAtcattctgtgtgtttgtgtgtgtgtatgcgcaccTGACATCttttgtgtttgagagtgtgtgaACAGATGCTTACAGTATGTGGAAAAAAAAGAGGACAAAAATAATCAGATATGTTTCATGTATATTGTAGTCATTTTGTCTCGTTTTTGACTCCCTACTCCTTTCTGAATTGCAATATAGTTGTCATAACATGATGTTGTGATTTGAAAGACATTGTAGCTGGTAGCTGAGCGAGCAGCTCCGCCTCAAGCCAGCCTTATTTTGGTTGACAATACGAAACAAGATAAAAATAGATCAACTCATTCTGCTGGCTGCACGTAAGCAGAGAGAAACTCCACCATTTGGTTATCAATGACAACTACAAAGCAGACCCAACTAAAACATTGTCGACATTACAACCAAACAATTTTTCTCTATCTTATTCAAATATTCACATCTGTTCTTTACAAGACACTGTTTCACACATaaagaaaaacatatttcaactcGGATAAGTCTCTAGTTTCATCACTTCATATATAGGTATATATGTAATAATTAAGGCAATCATTTGGGCCATGACTTACTCATTTCCATGCCTCCAGGCTTTCTAGGAAAGATTTTTGTTCCTTGTGCGCTCCGTATAATGTCCCAATGTCTAATTTGTCCATTCAAACTTCTGATGTCCGATCGCTGGGTTCACTCTTGCAGTAGATCTGTGGTTATCGATGTCCGTTGTCTCACCCCAGATGACCAGTCATAATATATGCTCTTTCTCTGCCAATTCCAAGAGTACCAGCCAGCACATCATCTCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU594074 True 3669 lncRNA 0.37 2 56278248 56281973

Neighbor

gene id symbol gene type direction distance location
LOC110526177 LOC106587086 coding upstream 44148 56185132 ~ 56234100 (+)
LOC110526175 LOC106587084 coding upstream 157501 56020625 ~ 56120747 (+)
LOC110526173 LOC106587080 coding upstream 288794 55982270 ~ 55990919 (+)
LOC110526171 LOC106587080 coding upstream 297344 55971440 ~ 55980904 (+)
LOC110526172 LOC106561172 coding upstream 310157 55965222 ~ 55968091 (+)
LOC110525039 NA coding downstream 39730 56321703 ~ 56328003 (+)
nr1h3 nr1h3 coding downstream 50732 56332705 ~ 56357630 (+)
LOC110526181 madd coding downstream 80058 56362031 ~ 56445865 (+)
LOC110526184 LOC106587093 coding downstream 271877 56553850 ~ 56562955 (+)
ptpmt1 ptpmt1 coding downstream 664381 56946354 ~ 56951411 (+)
G524074 LOC102208280 non-coding upstream 136042 56140696 ~ 56142206 (+)
G524073 NA non-coding upstream 137770 56139929 ~ 56140478 (+)
G524069 NA non-coding upstream 150427 56127519 ~ 56127821 (+)
G524199 NA non-coding downstream 42964 56324937 ~ 56325170 (+)
G524303 NA non-coding downstream 302303 56584276 ~ 56589481 (+)
G524371 NA non-coding downstream 395136 56677109 ~ 56756337 (+)
G524519 NA non-coding downstream 606576 56888549 ~ 56889643 (+)
G524521 NA non-coding downstream 610413 56892386 ~ 56892635 (+)
LOC110526169 LOC106587076 other upstream 362302 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 711749 55563439 ~ 55568167 (+)
G523529 NA other upstream 793641 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1337375 54793125 ~ 54954478 (+)
G525645 NA other downstream 1294111 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1322135 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1339875 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1357501 57639437 ~ 57642487 (+)
G525912 NA other downstream 1421485 57703458 ~ 57710340 (+)

Expression


Co-expression Network