G524469


Basic Information

Item Value
gene id G524469
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56893245 ~ 56895396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU594462
caaccaaccaaccaaataGGGATCACAATTTTGGCTCACAAAATGACTGCTTATTGAGTGTGCACTTAGCTTCACGCCTGTGGAGACCGTGTTATCCTTAATCCAAAACATTTAAGACAATATCGAAATGAAATTATTTTAAAAAGCAACTGTTTTGGCCATGTAATAAATTCAGCAATGTCTATgcctcacagcaaaatcacaacattgtaaaacaaaacaaatataaaGAAAACCATTTAATTGAATTCAACTAAAGGAGACTTCACAGAAATGCATTATTTTATCAATTAATATTACAGCTGTACAGACTAAGGTTTGGTCATGTGGCAAGTAAGCTCTACATGGTTGAACTTCTTTGAATTTCAATGTCACATTGTGAAATATAATAACTTTGTTCAAGTAGAAAAGGCAAAAACTGTACAAACCAAATTTTAAATAGAAAATTTGTCACTTTGTACCAATAATAATGCTAAAAATATCCAACAGGTTTCTTTTTTAGGATCACATTTAAACTCAGACCTAGCAGCTGACAAATCTGGAAATACAAATCTATCACAATGTTAAAATGAAATGAGCCCAGTCAATCCAATTACAATTTGTCTATTTTTTCTGCAGGTCAATTAATTTTAGGAGATTCCATCCAACACATTTTTTGTTGAACAATGGGAGATCAATAACCCAGAGAAGTGGTTTTTAACGGTGAAAATAATTAAAGGGTAGTTCCGAGTACAGAACACCTGACAGTTCTATGATGTGGGAAGAGGTTCCATTTCTAAGACCCAACCCTGGTTTGAGAAGAGGGCCCTGACGTTAACCAACAGGGATGGAGCCATGTTTTAACaactgcaaagacaatggtttgTATAGATGTGGACCACTTAAATGATGACAGTAGAAGGGATTCATTTTGCCCAAGTAAAGCAAATTGACAAGGTTAATGCACAACGACACACACTTAACACGGCAAAAGTTATCAGACAAAATCATAAGGTCAGATAAAGCATCACTTCACACGCTACAGACTGTGCCAATGCAATACATCTATATTAAAAGACAAGGTATGCTAATAAAACCTGTGCTCTCTGGGAGTAAAATACAAAGTTTATCAGGACCTGCATGAAAAGGTAGTGTTTAGCCTTTATTATGAGACAAAAACAAATCACTGAAAACACTCCCAACCCAACATAATTAATCCTGAAGTAGCTACAAATAAACCTTTAAGGGCACATGCTTTATAACCTGGTTTTAATGCATGAGATCTTTGATTTTGTTGTTTGACCTAGTTTGGGGACTACTTGTACAGAAAAATCTAAATCTTTTCAACACCTAACTTCACCTCAAATCCTAATGTAAAATATGGGTCCCTAAaatgagactaaacacacacatgaaAACCTACGAGGTACAACCCACCACATTAACGTTGAAAAAGAAACCAACACCTACTTTTTGTTGCCCAGATCATAACTTCAGTGGGTAACGTGTAAGAGATAAATGTGTCCAACAGTATCATTTGGCACTCGTTTATTCATCTTTTTTTCTTTCTATAAACAAAAAACTCAATCACATTTTGCTGAGGATTACAGTGCAGTTACAAAAAACGTGCATGCTAAATATATATTTAACTGTGAAAAGAaaagaaattctgctaatttagTATATTTTATTATTCAGACTAAGGATGATTTCCACACAAAAGGAAATTAAAACATTATGTGCCTGTGATGACTTCACACACTGAAAGACAAAAACGGTGATTCAAGTGTATATCGTTGTCACTCCCAAAAAATTTACCATCATGCCAACTAGCCTAGCACAAAATTACAAAGTCATCCCCAGTTCAGCAAAATGTGACCAAAGACATCCTAAAAAAAAGTGTATAACTTACAAGAGAAAAAACACCCAAACACAGAAGTCGTTTCTATAAATTGATTGGTTGTTTTCAGACACAAAACAAAAACGTAGGTTGGGGGGCGCTAGGAAGACCGCTCAAAACATAATGAAAAAAAGAAATGAGTTTACTATCAAGGTAAAAATTTAACAAAACAAAATTAAACAGATTTGGAAAAATCGAGTGGTTATGTCAGTAAGTTCTAGAAAAATAGATTCTCTTTTTTGCTTAAAACAATACTCATGTAGCTTTATACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU594462 True 2152 lncRNA 0.34 1 56893245 56895396

Neighbor

gene id symbol gene type direction distance location
LOC110526184 LOC106587093 coding upstream 330290 56553850 ~ 56562955 (+)
LOC110526181 madd coding upstream 447380 56362031 ~ 56445865 (+)
nr1h3 nr1h3 coding upstream 535615 56332705 ~ 56357630 (+)
LOC110525039 NA coding upstream 565242 56321703 ~ 56328003 (+)
LOC110526177 LOC106587086 coding upstream 659145 56185132 ~ 56234100 (+)
ptpmt1 ptpmt1 coding downstream 50958 56946354 ~ 56951411 (+)
ndufs3 ndufs3 coding downstream 58738 56954134 ~ 56960155 (+)
LOC110526195 LOC106587104 coding downstream 193351 57088747 ~ 57196089 (+)
LOC110526197 LOC106587108 coding downstream 366672 57262068 ~ 57277274 (+)
LOC110526201 LOC106587113 coding downstream 612536 57507932 ~ 57550725 (+)
G524521 NA non-coding upstream 610 56892386 ~ 56892635 (+)
G524519 NA non-coding upstream 3602 56888549 ~ 56889643 (+)
G524371 NA non-coding upstream 136908 56677109 ~ 56756337 (+)
G524303 NA non-coding upstream 303764 56584276 ~ 56589481 (+)
G524199 NA non-coding upstream 568075 56324937 ~ 56325170 (+)
G524473 NA non-coding downstream 3780 56899176 ~ 56899420 (+)
G524470 NA non-coding downstream 4583 56899979 ~ 56900254 (+)
G524472 NA non-coding downstream 10757 56906153 ~ 56906394 (+)
G524555 c1qtnf4 non-coding downstream 65367 56960763 ~ 56972189 (+)
G524577 LOC106587102 non-coding downstream 95147 56990543 ~ 56993453 (+)
LOC110526175 LOC106587084 other upstream 772511 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 977299 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1326746 55563439 ~ 55568167 (+)
G523529 NA other upstream 1408638 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1952372 54793125 ~ 54954478 (+)
G525645 NA other downstream 680688 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 708712 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 726452 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 744078 57639437 ~ 57642487 (+)
G525912 NA other downstream 808062 57703458 ~ 57710340 (+)

Expression


Co-expression Network