G524473


Basic Information

Item Value
gene id G524473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56899176 ~ 56899420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU594466
TGCTGAGGTTGGTCTGCTTGTCAATGAACACCTTAGCGGAAATAACGTTGCCAAAGGGCATGAACATCTGGAGCAGGTCCTGGTCTCCAAACTCCTGGGGGAGGTGGTATATGAACAAGTTGGCTCCCTCAGGGCCTTAAGAGAGCAggaaataatttattaaaacatctGACACCACAAGATGACAATGGATACAACTAAGCCAGAGGCAACCATTTTATTTTTGACAGATTAATAGCATTTCA

Function

NR:

description
PREDICTED: CUGBP Elav-like family member 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU594466 True 245 lncRNA 0.44 1 56899176 56899420

Neighbor

gene id symbol gene type direction distance location
LOC110526184 LOC106587093 coding upstream 336221 56553850 ~ 56562955 (+)
LOC110526181 madd coding upstream 453311 56362031 ~ 56445865 (+)
nr1h3 nr1h3 coding upstream 541546 56332705 ~ 56357630 (+)
LOC110525039 NA coding upstream 571173 56321703 ~ 56328003 (+)
LOC110526177 LOC106587086 coding upstream 665076 56185132 ~ 56234100 (+)
ptpmt1 ptpmt1 coding downstream 46934 56946354 ~ 56951411 (+)
ndufs3 ndufs3 coding downstream 54714 56954134 ~ 56960155 (+)
LOC110526195 LOC106587104 coding downstream 189327 57088747 ~ 57196089 (+)
LOC110526197 LOC106587108 coding downstream 362648 57262068 ~ 57277274 (+)
LOC110526201 LOC106587113 coding downstream 608512 57507932 ~ 57550725 (+)
G524469 NA non-coding upstream 3780 56893245 ~ 56895396 (+)
G524521 NA non-coding upstream 6541 56892386 ~ 56892635 (+)
G524519 NA non-coding upstream 9533 56888549 ~ 56889643 (+)
G524371 NA non-coding upstream 142839 56677109 ~ 56756337 (+)
G524303 NA non-coding upstream 309695 56584276 ~ 56589481 (+)
G524470 NA non-coding downstream 559 56899979 ~ 56900254 (+)
G524472 NA non-coding downstream 6733 56906153 ~ 56906394 (+)
G524555 c1qtnf4 non-coding downstream 61343 56960763 ~ 56972189 (+)
G524577 LOC106587102 non-coding downstream 91123 56990543 ~ 56993453 (+)
G525590 NA non-coding downstream 210100 57109520 ~ 57109750 (+)
LOC110526175 LOC106587084 other upstream 778442 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 983230 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1332677 55563439 ~ 55568167 (+)
G523529 NA other upstream 1414569 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1958303 54793125 ~ 54954478 (+)
G525645 NA other downstream 676664 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 704688 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 722428 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 740054 57639437 ~ 57642487 (+)
G525912 NA other downstream 804038 57703458 ~ 57710340 (+)

Expression


Co-expression Network