G524470


Basic Information

Item Value
gene id G524470
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56899979 ~ 56900254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU594463
gagattataacagaacatggccaagatgttcaaatgtaacCCTTTTATGCCCCATCTTCATCCCCCTACTTGCCTTCCTTCTGGCTCCCTGCAGCACTGACACTCTGTTGGGAGAGCAGGCTCTGGTTGTAGAGGCTGGGGAGGGCAGCAGCAGCGTACTGCTGGATCCCGGAGTAGGCCTGGGTAAGGGCTTCCATGGTGCTACCAGTTCCGTTCGACATGCCGCCGCTGCCTAGACCACCGTTCAGGGCTGCCATCCCTAGACACAGGAGCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU594463 True 276 lncRNA 0.57 1 56899979 56900254

Neighbor

gene id symbol gene type direction distance location
LOC110526184 LOC106587093 coding upstream 337024 56553850 ~ 56562955 (+)
LOC110526181 madd coding upstream 454114 56362031 ~ 56445865 (+)
nr1h3 nr1h3 coding upstream 542349 56332705 ~ 56357630 (+)
LOC110525039 NA coding upstream 571976 56321703 ~ 56328003 (+)
LOC110526177 LOC106587086 coding upstream 665879 56185132 ~ 56234100 (+)
ptpmt1 ptpmt1 coding downstream 46100 56946354 ~ 56951411 (+)
ndufs3 ndufs3 coding downstream 53880 56954134 ~ 56960155 (+)
LOC110526195 LOC106587104 coding downstream 188493 57088747 ~ 57196089 (+)
LOC110526197 LOC106587108 coding downstream 361814 57262068 ~ 57277274 (+)
LOC110526201 LOC106587113 coding downstream 607678 57507932 ~ 57550725 (+)
G524473 NA non-coding upstream 559 56899176 ~ 56899420 (+)
G524469 NA non-coding upstream 4583 56893245 ~ 56895396 (+)
G524521 NA non-coding upstream 7344 56892386 ~ 56892635 (+)
G524519 NA non-coding upstream 10336 56888549 ~ 56889643 (+)
G524371 NA non-coding upstream 143642 56677109 ~ 56756337 (+)
G524472 NA non-coding downstream 5899 56906153 ~ 56906394 (+)
G524555 c1qtnf4 non-coding downstream 60509 56960763 ~ 56972189 (+)
G524577 LOC106587102 non-coding downstream 90289 56990543 ~ 56993453 (+)
G525590 NA non-coding downstream 209266 57109520 ~ 57109750 (+)
G525595 NA non-coding downstream 213720 57113974 ~ 57114230 (+)
LOC110526175 LOC106587084 other upstream 779245 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 984033 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1333480 55563439 ~ 55568167 (+)
G523529 NA other upstream 1415372 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1959106 54793125 ~ 54954478 (+)
G525645 NA other downstream 675830 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 703854 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 721594 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 739220 57639437 ~ 57642487 (+)
G525912 NA other downstream 803204 57703458 ~ 57710340 (+)

Expression


Co-expression Network