G524577 (LOC106587102)


Basic Information

Item Value
gene id G524577
gene name LOC106587102
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56990543 ~ 56993453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU594574
TTTGATTCAAATGTTTAATTTCTGAATTGTACATAGATTAGCTTGTTACAGAAGTTTCAtgtaaaaccatgttcacagtgaGTGCAGAGCCGTGGAGACAGAAATGTTTCCATTGTCCTCAAAACAGTCTCATAGCTGTACACACCTTGCATCTCACCTCTTCCCACAGGTTTCAATCAACTAACTTAGAAACAAGTCTTACATCTCCCTGGTTTAGTTGGTTTAGTTCATATGCAAAATAAAAAGATAATTAAAATGATTTAaagaaaaataaattaaaatgcaAATAAGTCTGACTGTAGGTAAAATTTTGAATACAAAAAAAGGGTAGCGAAATAGGCGATATGGAATTACTCTCATAACCCTAATCTCACAAAAGTATGGCTATTTTACTGAAAATAAAAAACTAAGTGTGCACAGCAAACCAACGTGGGTTTGAATGCACTGTAACCTTAATCTACTAACCATCCCAAACATACCATTAGAAATATTAAGTGTATCTACATACTAAACATAGGGTCGGGAAAATGAACGTGAAGTACACAACATATCGTAAAGAAACTGCAAGTAACAGGTGAAAAACTGTGCATACCATCTCATCTTAATAAATACTTGGAAGTGAATTGTGCTTTGAGtgaaagctactgaaatgtcaaAATGTTTTTGATGCACAACAGAAGAGATCCTTTCTGCATCCTTGCAGAGGCATTCTCGTGATCAGTTAACTTGCCATGTACCATCTTGTCCTCCAGGGGTCGCTCATAACGTCACCCAGCCTAATCCACTGCCGAGTGCTGCCAATCACATGGCAGGGGAGGGCTCTGCAGACATCCTTCCCTGTTATCCTTTTCAAAAAGGCACTGTACCGGTTATGCCTAACACAAAGACCGAGGATAAAGCCCATGGGACGATGACCTCCATTCTGCTATTAATCCTCTAGTAGTTTGTTAAGGAAACATCAGTTTTTAAATTTGGACTATATTCCTGTCTCATTATACTTGAAATGAAGAGCAACAGCTGTCGCAACAAAAACACAAAGCACATCCAGTCTtctgggagaggggggggggggggggggggggggggacaacgaCAACTGGCTGTGCTGGTGTTGTCAGTAATTCTCATGTCTGTACTCTGTTGTACCAATGGCTGCATTATTGCCCAGGAAGGGGGCGGGTCATCAGGATGTGACGACCTGGACGTAGTTAGCAGGGTAAAGGCCCACCTCTCTGTTGGCCAGCTGCCCTTTGCACCAGCCCTGCTCGTCCTCCTCGCCCATCTTCATTAGCTCTTCACCTGCTTTAAAGCTCAGCTCATCCGCCTCCTGCCCAGTGTAATCATACAGCGCTCTAACTCGTACACCTGCTACCTTCTCTTCCTCATCCACCCCATTAGCAGCCATGACCTTTTTGGGGATGTCTTCGTCAGACCAGTCTGATGAGTAGTCTTTAACCCC

Function

NR:

description
protein kinase C and casein kinase II substrate protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU594574 True 1459 lncRNA 0.43 2 56990543 56993453

Neighbor

gene id symbol gene type direction distance location
ndufs3 ndufs3 coding upstream 30388 56954134 ~ 56960155 (+)
ptpmt1 ptpmt1 coding upstream 39132 56946354 ~ 56951411 (+)
LOC110526184 LOC106587093 coding upstream 427588 56553850 ~ 56562955 (+)
LOC110526181 madd coding upstream 544678 56362031 ~ 56445865 (+)
nr1h3 nr1h3 coding upstream 632913 56332705 ~ 56357630 (+)
LOC110526195 LOC106587104 coding downstream 95294 57088747 ~ 57196089 (+)
LOC110526197 LOC106587108 coding downstream 268615 57262068 ~ 57277274 (+)
LOC110526201 LOC106587113 coding downstream 514479 57507932 ~ 57550725 (+)
atg13 LOC106587118 coding downstream 565072 57558525 ~ 57568473 (+)
LOC110526205 LOC106587121 coding downstream 594140 57587593 ~ 57591339 (+)
G524555 c1qtnf4 non-coding upstream 18354 56960763 ~ 56972189 (+)
G524472 NA non-coding upstream 84149 56906153 ~ 56906394 (+)
G524470 NA non-coding upstream 90289 56899979 ~ 56900254 (+)
G524473 NA non-coding upstream 91123 56899176 ~ 56899420 (+)
G524469 NA non-coding upstream 95147 56893245 ~ 56895396 (+)
G525590 NA non-coding downstream 116067 57109520 ~ 57109750 (+)
G525595 NA non-coding downstream 120521 57113974 ~ 57114230 (+)
G525598 NA non-coding downstream 131130 57124583 ~ 57124805 (+)
G525600 NA non-coding downstream 132952 57126405 ~ 57126693 (+)
G525602 NA non-coding downstream 134044 57127497 ~ 57127728 (+)
LOC110526175 LOC106587084 other upstream 869809 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1074597 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1424044 55563439 ~ 55568167 (+)
G523529 NA other upstream 1505936 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 2049670 54793125 ~ 54954478 (+)
G525645 NA other downstream 582631 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 610655 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 628395 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 646021 57639437 ~ 57642487 (+)
G525912 NA other downstream 710005 57703458 ~ 57710340 (+)

Expression


Co-expression Network