XLOC_024397 (scamp2)


Basic Information

Item Value
gene id XLOC_024397
gene name scamp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 3015676 ~ 3034668 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048236
GCAGCGCATGCGCGTCGCGCTCTCACTACGGAAGCGCAGAAAGGAAACGGCAGCGATCGCAGCTCCGGTGCCGCTCAGTTTGGACTAAATAAAGGCGGATAAAATCCATCACGATGTCGGGATTTGACTCAAATCCATTCGCAGATCCAGTCGACGTCAATCCCTTTCAGGATCCGTCTGTCACTCAGGTGacgaactctggagtggatcACATTGAAAGCTTTAGTCCGTTTCCGGATGGGAATCAGGGATCCACTATTCCAGCATCAAGCGCCCCGACTCAACCTGCTGTCCTGCAGCCGTCAGTCGAGCCCAGTCCACAGGCCACAGCTGCCGCTGCGCAGGCCAGTCTGATCAAACAACAGGAGGAGCTGGAGAGAAAAGCAGCAGAGCTGGAGAGAAGAGAACAAGAGCTGCAGAGTAGAGGAGCAcccacagGCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGTgggAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAGGTCTGACAGCTCCTtcaatttcttcttcttcttcttcgtttTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAGCGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATGGTTCATTCGCACTATCGCCGCACCGGGGCCAGTTTCCAGAAGGCACAGCAGGAGTTTTCTCAGGGTGTCCTGACAAACCGCACTTTCCAGAGCGCAGCCACTAGTGCCGCCACCACGGCCGCCCAGAGCTCACTGCAGAGGAACTAGAACCACAAAAACAGCACCAGATCACACGTCTCCTTCCCAGAATCCTCTGCTCATTGGCCTGCTGCTCCAAAGCCCAGCTACGGCCCCAAAACTCCATCGGGTCCCAGTACGGACTGCAGAGGCACTACTTTCATGGTTATTTTTGGGTTTTTGAAGGCGAAGGTATGAAGCGtaaatgtttgtatatttgtgtgtgcgcAGGAGTAGTCATCCACATCAGTAgtgctgtaaatatatatatataaagtaatttaACGTTTCCCAGTCATGCAAAGTGGTACTTAAGTGTCCTTAAATTAAAATGATCATGAAGGAGCTCATCTGTTAAAGCCTTGATGAAGTTTAGATGTTATAACAAGAGTTCTAGATGTAAATAATGTTCTCTAGGGAATGTGCCATGTGCTTTCCTTGCTCATATTTGATTTGCTGAAAAGATTTTCCTATTTGTGCCAAACATAATGACATGCATCATGGGAAGCGGTAAACGTTTATTGTCTTAATAGTAAGACTGAAGGTTTGGGTTGGATTTTTTACATTGGGTTTAATTCATGCTGCATCGTCTGTTGATTGTGTACAAGCTTGTTTTTTTAGGTAGCTGATTATAAACGGTCCAATCAAATCAGTTTTACATGAACgtaaatttaattactttttttaaagcctTTTGAAACAAAGCGCTCCTGAAATGTGTTGATATAAAATACCACTTAGAGACGGCTACACAATGTTATCAGATTAGATTTGAAGATGTTTTTCATGGTATTTTTTGAACTAATTAAATTTTTCTGATTAA
>TCONS_00048237
GCAGCGCATGCGCGTCGCGCTCTCACTACGGAAGCGCAGAAAGGAAACGGCAGCGATCGCAGCTCCGGTGCCGCTCAGTTTGGACTAAATAAAGGCGGATAAAATCCATCACGATGTCGGGATTTGACTCAAATCCATTCGCAGATCCAGTCGACGTCAATCCCTTTCAGGATCCGTCTGTCACTCAGGTGacgaactctggagtggatcACATTGAAAGCTTTAGTCCGTTTCCGGATGGGAATCAGGGATCCACTATTCCAGCATCAAGCGCCCCGACTCAACCTGCTGTCCTGCAGCCGTCAGTCGAGCCCAGTCCACAGGCCACAGCTGCCGCTGCGCAGGCCAGTCTGATCAAACAACAGGAGGAGCTGGAGAGAAAAGCAGCAGAGCTGGAGAGAAGAGAACAAGAGCTGCAGAGTAGAGGAGCAcccacagGCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGTgggAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAGGTCTGACAGCTCCTtcaatttcttcttcttcttcttcgtttTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAGATGTATTTCTCTTCCTGTCTCTCCGAGCGTCTCTTCCTGCACTAACGGTTTTCTGCTGCTGGACTTCCTGTAAAACTCTTGCTTCCTGTCTGCAGTTTGTCGCTCTTCAATGTTCTTCTTCCCTCATCGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATGGTTCATTCGCACTATCGCCGCACCGGGGCCAGTTTCCAGAAGGCACAGCAGGAGTTTTCTCAGGGTGTCCTGACAAACCGCACTTTCCAGAGCGCAGCCACTAGTGCCGCCACCACGGCCGCCCAGAGCTCACTGCAGAGGAACTAGAACCACAAAAACAGCACCAGATCACACGTCTCCTTCCCAGAATCCTCTGCTCATTGGCCTGCTGCTCCAAAGCCCAGCTACGGCCCCAAAACTCCATCGGGTCCCAGTACGGACTGCAGAGGCACTACTTTCATGGTTATTTTTGGGTTTTTGAAGGCGAAGGTATGAAGCGtaaatgtttgtatatttgtgtgtgcgcAGGAGTAGTCATCCACATCAGTAgtgctgtaaatatatatatataaagtaatttaACGTTTCCCAGTCATGCAAAGTGGTACTTAAGTGTCCTTAAATTA
>TCONS_00048238
CTTGCAGGACAGGCCTGTTGGCTAGTTGCTGTGTGGTGTGAAAGCCCTGTATTTGTTGTTACTGGCCGACATGTAGCTGAGGATTGTGGGAAATTTGTGTGTGGTTCTCCTCAGGCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGTgggAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAGGTCTGACAGCTCCTtcaatttcttcttcttcttcttcgtttTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAGCGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATGGTTCATTCGCACTATCGCCGCACCGGGGCCAGTTTCCA
>TCONS_00049317
TCAGGGATCCACTATTCCAGCATCAAGCGCCCCGACTCAACCTGCTGTCCTGCAGCCGTCAGTCGAGCCCAGTCCACAGGTCAGCATCACACACGCAGACACTTCTTCACAGTGTGTTTAAAGTGGATTTaacgtgtgtgggtgtgtgtgcagGCCACAGCTGCCGCTGCGCAGGCCAGTCTGATCAAACAACAGGAGGAGCTGGAGAGAAAAGCAGCAGAGCTGGAGAGAAGAGAACAAGAGCTGCAGAGTAGAGGAGCAcccacagGCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGTgggAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAGGTCTGACAGCTCCTtcaatttcttcttcttcttcttcgtttTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAGCGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATGGTTCATTCGCACTATCGCCGCACCGGGGCCAGTTTCCA
>TCONS_00048239
TCAGGGATCCACTATTCCAGCATCAAGCGCCCCGACTCAACCTGCTGTCCTGCAGCCGTCAGTCGAGCCCAGTCCACAGGTCAGCATCACACACGCAGACACTTCTTCACAGTGTGTTTAAAGTGGATTTaacgtgtgtgggtgtgtgtgcagGCCACAGCTGCCGCTGCGCAGGCCAGTCTGATCAAACAACAGGAGGAGCTGGAGAGAAAAGCAGCAGAGCTGGAGAGAAGAGAACAAGAGCTGCAGAGTAGAGGAGCAcccacagGCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGTgggAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAGGTCTGACAGCTCCTtcaatttcttcttcttcttcttcgtttTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAGCGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATG

Function

symbol description
scamp2 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP2 (secretory carrier membrane protein 2).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2702 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP2 (secretory carrier membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000010279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048236 False 1887 mRNA 0.47 9 3015676 3034668
TCONS_00048237 False 1520 nonsense_mediated_decay 0.52 10 3016170 3034668
TCONS_00048238 False 661 lncRNA 0.52 5 3016578 3025127
TCONS_00049317 False 815 lncRNA 0.53 6 3016578 3027087
TCONS_00048239 True 777 lncRNA 0.53 5 3019202 3027087

Neighbor

gene id symbol gene type direction distance location
XLOC_024396 adpgk coding downstream 291643 2706722 ~ 2724033 (-)
XLOC_024395 BX957346.3 coding downstream 329694 2672491 ~ 2685982 (-)
XLOC_024394 BX957346.1 coding downstream 376859 2546343 ~ 2638817 (-)
XLOC_024393 NA coding downstream 530628 2483112 ~ 2485048 (-)
XLOC_024392 mrps35 coding downstream 660569 2333258 ~ 2355107 (-)
XLOC_024398 si:ch1073-296i8.2 coding upstream 12461 3047129 ~ 3058722 (-)
XLOC_024399 best1 coding upstream 35003 3069671 ~ 3087556 (-)
XLOC_024400 epx coding upstream 85142 3119810 ~ 3139805 (-)
XLOC_024401 hps5 coding upstream 113763 3148431 ~ 3192405 (-)
XLOC_024402 gtf2h1 coding upstream 162187 3196855 ~ 3217115 (-)
XLOC_024391 NA non-coding downstream 702643 2309414 ~ 2313033 (-)
XLOC_024390 NA non-coding downstream 715927 2275525 ~ 2299749 (-)
XLOC_024405 NA non-coding upstream 267856 3302524 ~ 3306305 (-)
XLOC_024407 NA non-coding upstream 343155 3377823 ~ 3393705 (-)
XLOC_024410 NA non-coding upstream 495799 3530467 ~ 3531168 (-)
XLOC_024415 NA non-coding upstream 711496 3746164 ~ 3747949 (-)
XLOC_024421 NA non-coding upstream 846054 3880722 ~ 3884430 (-)

Expression


Co-expression Network