G525643 (LOC106587109)


Basic Information

Item Value
gene id G525643
gene name LOC106587109
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57280607 ~ 57293416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU595719
CTGAGAGTTTATTTTAAGTGGTAGATGTTTTTCTGTTCCAAGGGTTTGTGTAATAATAATGACAGTAATTACAAAAATGAGAGTACAGATGAACTGTGTGAAGGCGTATGTATGTGTTTGCTAAAATATGAACGCAGCAGTTCGACTCAAAATCGCCTGACACCTTTTgaagtatatatattataaaacTAATCGTTTTAACAATACCACTATTATCGTTACAAAGACAATGACTGCCTTCTCTTGAGCATTCAATCTCAGCTTTGTATTGTACATGAAACACGTTGAGCTGACAGTCCTCAGTTTACTAGAAAAATAGTTGATTTGCATCTCTCTACTTTTACTAATTGGCACACGCAACTGAAATCCACTCATCAATTCTGTTAGTAATACTAATTGGTAGTCAAGAGAAAACTATAACAATCACAACAATGTAAGATGAacatttttcatttaaaaaaactcAAGTATATCAAATCTACTGGTTAAAATCATCTCAAACAAGGAGCTTTGCCTTGACTCCAGTTGAACTAATGTAAAGGAACTGAGAgcgtacaaaaaaaatacaacaaactCTGGTTGTACATCACAAGGTTGTTTAGGTAGATCTAAAACACTGCTGAGTTCAAGAGTATCTGTTTCTTGCATATCTTGCATAATACAGCATGTCCAGAACTGCATTCTTACTTGCCAAATTGCCAGGCCACTGACAGCTGGAtatttttgtgattttttttttgtgtttgtctACATTTGTGGGATATTTGGTCAATATTCAGAGACATTTAGCATTTGTTATACTGTATTTGAAGGAAGGGCCCACTTGACATCTCATAATTCACTTGTGCATATTATGTTTGTTGAAAAAGCAAAGGATATTGCGTAATAAAATCCAACCAATCACTTCTTCAATGTGGACTCATCCACCTTCTAGTTCTCCTTGCCTCTTCCCTTCTTTCCTTTGGCCTTTGTCTTGGTCTTTGTGGGGCATGGCTTAGACACCTTGATGGTGGGTTGGCACTCTGCGTCGTACAGGGCCTTTTTCAGGGTTCCAGACCGGTTCTTGGATCCAGTAGCTGTATCACactcaccccagctgccaaacttaTACTTGCAGTCAGCGCCGAACTCCTTCTTCCAGTTGCAAGGCACTTTGCACTTCAGTTTCCTCATCTGGTCGTTGCAGGTGCCCTCTCTGACACCGGCTCCACAGTCTCCGTTGTTAGGCACACAGCTACCATAGCGCCATTCCGCACACTCAGTGGCAGCACCCTTGGCCCCTTTCCCCTTCTCTCTCTTGTTTTTCCCTGCTTCAGTGGTGACTATCATCAAGGCCACCAGAAGCACCACAACTGTTGAGAACAAACCTCGCATATTGTTTCTTTGATCGTACTTCTTGGCGAGAGTTAAAGGTCTTACTCTGAGCCACAAGAGAGTCCTACAGTCCTAGAATACCTCTATCCCGGTCAGCTTGCTCTTATTTGTCGCCCTCCCCTTTGTTTCT

Function

NR:

description
midkine-B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU595719 True 1504 lncRNA 0.41 5 57280607 57293416

Neighbor

gene id symbol gene type direction distance location
LOC110526197 LOC106587108 coding upstream 3333 57262068 ~ 57277274 (+)
LOC110526195 LOC106587104 coding upstream 84518 57088747 ~ 57196089 (+)
ndufs3 ndufs3 coding upstream 320452 56954134 ~ 56960155 (+)
ptpmt1 ptpmt1 coding upstream 329196 56946354 ~ 56951411 (+)
LOC110526184 LOC106587093 coding upstream 717652 56553850 ~ 56562955 (+)
LOC110526201 LOC106587113 coding downstream 214516 57507932 ~ 57550725 (+)
atg13 LOC106587118 coding downstream 265109 57558525 ~ 57568473 (+)
LOC110526205 LOC106587121 coding downstream 294177 57587593 ~ 57591339 (+)
fbxo3 fbxo3 coding downstream 328379 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 coding downstream 346021 57639437 ~ 57642487 (+)
G525698 NA non-coding upstream 2572 57277595 ~ 57278035 (+)
G525671 NA non-coding upstream 39724 57240665 ~ 57240883 (+)
G525667 NA non-coding upstream 43536 57236848 ~ 57237071 (+)
G525663 NA non-coding upstream 47301 57233094 ~ 57233306 (+)
G525583 NA non-coding upstream 78781 57201656 ~ 57201826 (+)
G525799 NA non-coding downstream 136187 57429603 ~ 57432552 (+)
G525654 znf408 non-coding downstream 288396 57581812 ~ 57584090 (+)
G525656 NA non-coding downstream 292102 57585518 ~ 57587316 (+)
G525647 NA non-coding downstream 299238 57592654 ~ 57594166 (+)
G525655 NA non-coding downstream 300985 57594401 ~ 57594669 (+)
LOC110526175 LOC106587084 other upstream 1159873 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1364661 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1714108 55563439 ~ 55568167 (+)
G523529 NA other upstream 1796000 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 2339734 54793125 ~ 54954478 (+)
G525645 NA other downstream 282668 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 310692 57604108 ~ 57606367 (+)
G525912 NA other downstream 410042 57703458 ~ 57710340 (+)

Expression


Co-expression Network