G525654 (znf408)


Basic Information

Item Value
gene id G525654
gene name znf408
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57581812 ~ 57584090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU595730
GGGGCAGGTAGTTTTAGTAGTCCTTGAAAAGAACATTTGCTGCAGGTAGTAGCTAGATAAGGTCCACCACAAATGTGAGTCAATATTAGCTTATATCTTTAACTCGTTCACAGCTGTCTCCCTTCTCCACTACCGGTAATCTAAATGGAGTATCCTGATGGTGATATCATAACATACTTGATATTCATGAAGAAGGTATTTTCCGAAGTAAGTACTGCTTATTGTCTTCTTTTAGGTAAAGTACATCTAGAATGCAAAAATAGTTTTTATTCACATTCTTGGTTTTATTTGAAGATTTAATTAAACAGCAACAGAAAGCAAAATGGTGTGAATTGCAGTTTTAAACTCCCGTTTCGATCTCTATTGTCTCTGCCACAGAGCTCAGTCCATCCTCGCCATGTAGAATCACCAGGTTGCTGTGTGTTTTGTGCTCCCTTAGAACAATGCACTTATCATTAGAGTCTGAGACAATTATCTCAATGATATTCTCATTTAGCTGGAATTGGCCCACATCCTGTTCCAAACCTTCCTCTATTACCACAGGAGATATGTCACTATCATGGTATGAGTCACAGGTGCTGACAATAACCTCCCCTGAATTAGGCAAGGCTAAGTCTTCAATGGCCTGAACATACACTACTGTCTGACACTCCATGTTCTCTTCAGGGACATCGACCCATGGCTTGACCTCTGTATTGTGAGGGGTCTTTCTAGGTCTGCCTCTAGCAGGGGCAGAGTGGCTAGACTCCAGAGCTGCTAGGGTGTTAGGACATCTGGGGAGCTAGCTATCTTCTCTCTTTTGATGGGAGAACTGGTGGCGAACCAGGCTCTGCATTAGCGTGTAGCCAGCACCACATGTCGGACATTTGTAGGACTTCTCCTCAAGGTGGGACTTCATGTGGCAGCGTAGCTTGGTGGCCATGGTGTAGGCTTTCCCACACAGCTCACACTGTGTGAggtctctcccctgtgtgtaaACGTTCGTGGGCCCGCAAGGTGTGGGGGTCCCGCAAGGCTTTGCCACATATAGGGCAGAGGTAGACTTCCCCTGTGTGTGATATGAGGTGTCTGCGGAGTTCAGGCACCTGTGAGAAGTACTGATTGCAATGGTTGCACTTGTAAGGCTTTTCCCCTGTGTGGATGTGTAGATGCCCCAAAAGATTCCCCCGCTGTCGGAATGTCTTATTGCAGTGGGGACAGGCATAAGGCCGTTCTCCTGTTTGCAAGCGCATGTGATTCCTAAGGGAGCCTGAATTGGCCAGTTGGTTACCGCAGACAGGGCACTTGAGCTTAGGAGCATGGTAATTTTCTTCCTTAGCGCGGTGGGCCTCCCTATGAATACTGAAGGCCAGCGGGCAAAAGCCTTCCCACATATATCGCAGACAAAAGGCCTCTCTCCTGTATGGAGAACTTCATGCTCCTTCAGGTCCCGTTTCAGGCCATAGCTCTTGTCACGCTGCTGGCACTTGAATGGCCTCTCTCCCTTATGCATCAGAAGGTGGGCCCTGAAGTTCTCTTGGGAGCTGTAATTCCTACCACACTCTGTGCATAAGTAAGGCTTTAGGCCCAAGTGGGTGAATTTGTGCTTCTTCAGGTGATATAGCTGAAAGAAACTCTTGTCACACTGGTCACTGGTCACACTTTCCCTGGTGTTAAAGAGGTCTGGAGCCATCATAAACTCCTCTGTGTCTTGCTTCCCCCCTTTGTCAAGATCCTTTGGGATTTCATCTGAGCTTATATTTTCTCCAGCTTTTATATCTGTTTCTTGGCAAGCTCGTCCATTTTCATCACCAACTCTGGACGTAATCTCCAATGTCACTTGACGATCCAGATACCCATTTTTGCACACTTGAAGACGCTTGTGGATGCAGCTGACTAATGAATGTACCTTCCTGGGTTCAGCAGCCCGTCTGCAACTGGCCCTGACAACCTGTGGCCCCTGCACCTCCTGGGGTTTTCCTACCACATTATCTGGTTCTTCACTACTCTTTGAAGGCTCGTCAGCAGGACTCACAAGTTTGTCCCCAGAGCATGGCACATTGGTTATTTCTGGACTGAAACAttctgtttttattattttgcAAGAGTGAACTTCTCTATTCTGTTCCATTGTTTTCTCACCACTGGAATGAGAGTCTCTCACACATCTCTTGTTCATTTTGTAGATAAGAGGTTTGCTCCTTTTGATTCCAGTCTGgcttttcttctcctcctccaccaccatagACTCTGTAAACCCCAGTGGAGTTGTTGACATGTCTGAATCTTCAGTGTGCTCC

Function

symbol description
znf408 Predicted to enable metal ion binding activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in nucleus. Used to study exudative vitreoretinopathy. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 6 and retinitis pigmentosa 72. Orthologous to human ZNF408 (zinc finger protein 408).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU595730 True 2279 lncRNA 0.47 1 57581812 57584090

Neighbor

gene id symbol gene type direction distance location
atg13 LOC106587118 coding upstream 13339 57558525 ~ 57568473 (+)
LOC110526201 LOC106587113 coding upstream 31087 57507932 ~ 57550725 (+)
LOC110526197 LOC106587108 coding upstream 304538 57262068 ~ 57277274 (+)
LOC110526195 LOC106587104 coding upstream 385723 57088747 ~ 57196089 (+)
ndufs3 ndufs3 coding upstream 621657 56954134 ~ 56960155 (+)
LOC110526205 LOC106587121 coding downstream 3503 57587593 ~ 57591339 (+)
fbxo3 fbxo3 coding downstream 37705 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 coding downstream 55347 57639437 ~ 57642487 (+)
aplnr2 LOC106586995 coding downstream 60577 57644667 ~ 57647053 (+)
psmc3 psmc3 coding downstream 65842 57649932 ~ 57659929 (+)
G525799 NA non-coding upstream 149260 57429603 ~ 57432552 (+)
G525643 LOC106587109 non-coding upstream 288396 57280607 ~ 57293416 (+)
G525698 NA non-coding upstream 303777 57277595 ~ 57278035 (+)
G525671 NA non-coding upstream 340929 57240665 ~ 57240883 (+)
G525667 NA non-coding upstream 344741 57236848 ~ 57237071 (+)
G525656 NA non-coding downstream 1428 57585518 ~ 57587316 (+)
G525647 NA non-coding downstream 8564 57592654 ~ 57594166 (+)
G525655 NA non-coding downstream 10311 57594401 ~ 57594669 (+)
G525897 NA non-coding downstream 97898 57681988 ~ 57682196 (+)
G525903 NA non-coding downstream 110542 57694632 ~ 57694840 (+)
G525645 NA other upstream 742 57576084 ~ 57581070 (+)
LOC110526175 LOC106587084 other upstream 1461078 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1665866 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 2015313 55563439 ~ 55568167 (+)
G523529 NA other upstream 2097205 55484249 ~ 55484607 (+)
G525861 LOC106587122 other downstream 20018 57604108 ~ 57606367 (+)
G525912 NA other downstream 119368 57703458 ~ 57710340 (+)
G525972 NA other downstream 233734 57817824 ~ 57818280 (+)

Expression


Co-expression Network