G525647


Basic Information

Item Value
gene id G525647
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57592654 ~ 57594166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU595723
ctgtctgtaaacaattgttggaaaatgtacttgtgtcatgcacaaagtagatgtcctaaccaacttgccaaaactatagtatgttaacaagacatttgtggagtggttaaaaaacaagttttaatgaccccaacctaagtgtatgtaaacttttgtcttcaactgtgtatacagtaccagtcaaaagttttagaacacctactcattcatgggtttttctttatttttactattttctacattgtagaataatagtgaagacatcaaaactatgaagtaacacatatggattcatgtagtatccaaaaaagtgttaataaatcaaaatgtattttatatttgagattcttcaaattgccaccctttgccttgatgacagctttgcaaactcttggcattctctcaaccagcttcatgaggtattcacctgaaatgcatttcaacttacaggtgtgccttcttaaaactgaatttgtggaatgtcgttccttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggaggggtatacagaagatagcctatttggtaaaataccaagcccatattatggcaagaacatccatcattactttaagacatgaaggtcagtcaatcttgaaaatttcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaccatcaagcgctatgatgaaactggctctcatgatgacTGCCACAGGAattgaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcagaaattgcagcccaaataaatgcttcacagatttacaacataaactgttcagaggagactgtgtgaatcaggctttcatggtcgaatttctgcaaagaaaccactactaaaggacactaataagaagaagagacttgcttgtgccaagaaacacgagcaatggatattagaccggtgtaaatgtgtcctttggtttggagtccaaattggaaatgtttggttccaaccaccgtgtctttgtgagacgcagtgtgggtgaacagctgatctccacatgtgtatttcccactgtaaagcatggaggaggaggtgttatggtgtggtgctttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcatggctgccacaaCATTCTGcgcttagttggactatcatttgtttttcaataggacattgacccaacacacctccagtctgtgtaagggctatttgaccaagaaggagagtgatggaatgctgcatcagatgacctggcctccacaatcccacaacctcaaccaaattgagatgtttgggatgagtcggatggcagagttaaggaaaagcagccaacaaatgctcagcatatgtgggaactccttcaagactgttggaaaagcattccatgtgaagctggttgagagactgccaagagtgtgcaaaactgtcaaggcaaatggtggctatttgtagattctaaaatgt

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU595723 True 1513 lncRNA 0.40 1 57592654 57594166

Neighbor

gene id symbol gene type direction distance location
LOC110526205 LOC106587121 coding upstream 1315 57587593 ~ 57591339 (+)
atg13 LOC106587118 coding upstream 24181 57558525 ~ 57568473 (+)
LOC110526201 LOC106587113 coding upstream 41929 57507932 ~ 57550725 (+)
LOC110526197 LOC106587108 coding upstream 315380 57262068 ~ 57277274 (+)
LOC110526195 LOC106587104 coding upstream 396565 57088747 ~ 57196089 (+)
fbxo3 fbxo3 coding downstream 27629 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 coding downstream 45271 57639437 ~ 57642487 (+)
aplnr2 LOC106586995 coding downstream 50501 57644667 ~ 57647053 (+)
psmc3 psmc3 coding downstream 55766 57649932 ~ 57659929 (+)
LOC110526217 hce2 coding downstream 118995 57713161 ~ 57716278 (+)
G525656 NA non-coding upstream 5338 57585518 ~ 57587316 (+)
G525654 znf408 non-coding upstream 8564 57581812 ~ 57584090 (+)
G525799 NA non-coding upstream 160102 57429603 ~ 57432552 (+)
G525643 LOC106587109 non-coding upstream 299238 57280607 ~ 57293416 (+)
G525698 NA non-coding upstream 314619 57277595 ~ 57278035 (+)
G525655 NA non-coding downstream 235 57594401 ~ 57594669 (+)
G525897 NA non-coding downstream 87822 57681988 ~ 57682196 (+)
G525903 NA non-coding downstream 100466 57694632 ~ 57694840 (+)
G525905 NA non-coding downstream 101102 57695268 ~ 57695488 (+)
G525908 NA non-coding downstream 104284 57698450 ~ 57698764 (+)
G525645 NA other upstream 11584 57576084 ~ 57581070 (+)
LOC110526175 LOC106587084 other upstream 1471920 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1676708 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 2026155 55563439 ~ 55568167 (+)
G523529 NA other upstream 2108047 55484249 ~ 55484607 (+)
G525861 LOC106587122 other downstream 9942 57604108 ~ 57606367 (+)
G525912 NA other downstream 109292 57703458 ~ 57710340 (+)
G525972 NA other downstream 223658 57817824 ~ 57818280 (+)

Expression


Co-expression Network