G525903


Basic Information

Item Value
gene id G525903
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57694632 ~ 57694840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU595997
CAATATTACCTCCCAAATCTACTACAGCTAATCCTACATGTTTCTACCCTGTGCTTTGATCTATGTAGGCAGATCCATCAACGAACAGCAACATGTCAGAGTCAATCAGAGGTTCAACAAACAAGTTTTTGTCCAGTACACATTCCTGGGCTGTCCAGATGTCCCTGTTATTGTTACTGATGATTTGCTCAGGGAAGCTCTCCAACAAC

Function

NR:

description
HERV-H LTR-associating protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU595997 True 209 lncRNA 0.43 1 57694632 57694840

Neighbor

gene id symbol gene type direction distance location
psmc3 psmc3 coding upstream 34703 57649932 ~ 57659929 (+)
aplnr2 LOC106586995 coding upstream 47579 57644667 ~ 57647053 (+)
LOC110526214 LOC106587124 coding upstream 52145 57639437 ~ 57642487 (+)
fbxo3 fbxo3 coding upstream 59391 57621795 ~ 57635241 (+)
LOC110526205 LOC106587121 coding upstream 103293 57587593 ~ 57591339 (+)
LOC110526217 hce2 coding downstream 18321 57713161 ~ 57716278 (+)
LOC110526219 LOC106587128 coding downstream 34604 57729444 ~ 57734935 (+)
LOC110526218 LOC106587128 coding downstream 49292 57744132 ~ 57760940 (+)
LOC110526223 LOC106561972 coding downstream 148154 57842994 ~ 57863756 (+)
fgf3 LOC106587135 coding downstream 221505 57916345 ~ 57921070 (+)
G525897 NA non-coding upstream 12436 57681988 ~ 57682196 (+)
G525655 NA non-coding upstream 99963 57594401 ~ 57594669 (+)
G525647 NA non-coding upstream 100466 57592654 ~ 57594166 (+)
G525656 NA non-coding upstream 107316 57585518 ~ 57587316 (+)
G525654 znf408 non-coding upstream 110542 57581812 ~ 57584090 (+)
G525905 NA non-coding downstream 428 57695268 ~ 57695488 (+)
G525908 NA non-coding downstream 3610 57698450 ~ 57698764 (+)
G525969 NA non-coding downstream 115900 57810740 ~ 57810945 (+)
G526375 NA non-coding downstream 135701 57830541 ~ 57830787 (+)
G526386 NA non-coding downstream 145671 57840511 ~ 57840853 (+)
G525861 LOC106587122 other upstream 88265 57604108 ~ 57606367 (+)
G525645 NA other upstream 113562 57576084 ~ 57581070 (+)
LOC110526175 LOC106587084 other upstream 1573898 56020625 ~ 56120747 (+)
G525912 NA other downstream 8618 57703458 ~ 57710340 (+)
G525972 NA other downstream 122984 57817824 ~ 57818280 (+)
G526547 NA other downstream 416066 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 577239 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 624080 58318920 ~ 58408967 (+)

Expression


Co-expression Network