G526447


Basic Information

Item Value
gene id G526447
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57943815 ~ 57945202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU596586
acagcttggaaaattccagaaaattatgtcatggctttagaagcttctgataggctaatttacatcatttcagccaattggaggtgtatctgtggatgtatttcaatgcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaaaaaaattgtagacctccacaagtctggttcatcgttgggagcaatttccaaacgcctgaaggtaccacgttcatttgtacaaacaatagtatgcaagtataaccaccatgggaccacgtagccatcacactgctcaggaaggagacgtgttctatctcctagagatgaacgtactttggtgtgaaaagtgcaattcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatacccacagtaaattacataacctgaaaggcagctcagcaaggaagaagccacttctccaaaaccgccatagaaaaagccagactacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgactatagttatgtttggaggaaaaagggggaattttgcaagccaaagaacaccatcccaaccatgaagcacggggtggcagcatcatgttgtgggggtgctttgctgcagaagggactggtgcacttcacaaaatagatggtatcataaggagggaaattatgtggatatattgaagcaacatctcaagacatcagttaaagcttggtcgcaaatgggtcttccaaatggacattgacccaagcatacttccaaagttgttgcaaaatggctaaaggacaacaaagtcaatgtattggagtgtccatgacaaagccctgacctcaatcgtatagaacatttgtgggcagaactgaaaaagcacgtacgagcaaggaggcctacaaacctgattcagttacaccagctctgtcaggaggaatgggccaaattcacccaacttattgtgggaagcttgtggaaggctacccaaaacgtttgacccaagttaaacaatttaaaggcaacactaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaatagaagctgaaattagtaattctctctactattattctgacattttacatttttaaaataaagtggtgatcctaactgacccaagacagggaatttttactcggattaaaggaatttaaatgtatttggctgagttCTATGTAAACATTCGACTCCAACTGTATTTGTAAATACTTATGTATTTGTacagcttttaaaaaaaataattaggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU596586 True 1388 lncRNA 0.40 1 57943815 57945202

Neighbor

gene id symbol gene type direction distance location
fgf19 LOC106586997 coding upstream 131 57941240 ~ 57943684 (+)
LOC110526226 LOC106587136 coding upstream 7549 57928778 ~ 57936266 (+)
fgf3 LOC106587135 coding upstream 22745 57916345 ~ 57921070 (+)
LOC110526223 LOC106561972 coding upstream 80059 57842994 ~ 57863756 (+)
LOC110526218 LOC106587128 coding upstream 182875 57744132 ~ 57760940 (+)
LOC110526232 dhcr7 coding downstream 206638 58151840 ~ 58158582 (+)
LOC110526234 LOC106587141 coding downstream 273687 58218513 ~ 58228939 (+)
LOC110526233 LOC106587142 coding downstream 283205 58228407 ~ 58236139 (+)
LOC110526235 LOC106586999 coding downstream 291058 58236260 ~ 58243577 (+)
LOC110526238 LOC106587144 coding downstream 315301 58260503 ~ 58263649 (+)
G526418 NA non-coding upstream 68835 57874116 ~ 57874980 (+)
G526416 NA non-coding upstream 70447 57873168 ~ 57873368 (+)
G526415 NA non-coding upstream 70705 57872766 ~ 57873110 (+)
G526411 NA non-coding upstream 74113 57869500 ~ 57869702 (+)
G526395 NA non-coding upstream 92618 57850993 ~ 57851197 (+)
G526462 NA non-coding downstream 6331 57951533 ~ 57951744 (+)
G526476 NA non-coding downstream 37041 57982243 ~ 57982469 (+)
G526491 NA non-coding downstream 61036 58006238 ~ 58006461 (+)
G526515 NA non-coding downstream 90093 58035295 ~ 58040467 (+)
G526512 NA non-coding downstream 135801 58081003 ~ 58083393 (+)
G525972 NA other upstream 125535 57817824 ~ 57818280 (+)
G525912 NA other upstream 233475 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 301333 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 316196 57621795 ~ 57635241 (+)
G525861 LOC106587122 other upstream 337448 57604108 ~ 57606367 (+)
G526547 NA other downstream 165704 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 326877 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 373718 58318920 ~ 58408967 (+)
G527450 NA other downstream 833521 58778723 ~ 58779017 (+)
G528653 NA other downstream 1826506 59771708 ~ 59772084 (+)

Expression


Co-expression Network