G526512


Basic Information

Item Value
gene id G526512
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58081003 ~ 58083393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU596652
TCTTGGACAGTTCCGAGGAGACATTCAGCGTGAACAAAGCTGACACAACAGATAACAAGATAACTTGCACTTACTTTGCTATTGTTGACAGTAATGGCCATCAGCAGACAAAACAAAAGGTGGGATGGGGCGGGATCGGGGGAATTTTTGGGGAAAGTCCGCTTGTTTGCTTTCCACATGGTTTCACACAAACTGTTGGCAAACAAACTCAATTAGACAACAAACAAAGGTTGACAAATGCATGTTGATAATAACAGAAAATGAGATGCATCATGCTCATTCATGCCCTTCAGTCACTACATTGACAAACTGGAAGCATGAATAAAACCACTCCAGTGTTGCCTCTGCTTATGATGTCAACCTCCACAGACACTTGTATTGGCAAGTATTTCCACCATGTTTAATGGCTAAGAAAAACACGTCATAACTTGAATCACCTCCAACTCCCACCGCTATACCTTGGATAACCTATGCTGTCCATTTGCACCTAGACGAGATGTCTCGCTAAATGAAGCGACGATGAGCAAAGGCGAAACAGAATGcaagacacacagagactcatCTCGGGCCATTTCTAAGACTCTTGGAAGCTCTCAATCAGTTCACTATAAAGACCGATTGAAGTCCAGACAGGGTCATTGTGATGCTACTGTACCAATTCCATATGAAACGAGTGCTCTTGTTTGTTATGACCTGAACCACCCTGTGATTGTATCAGAGACGCGTGGGCAAATAGAAAATGACCATGGGTGGCTGGGTCTGGTTGCTCTGCGTGCCCCAAGGGATGTAACACTGAAGAGGCCGGCTGAGGCTGACCacgaacaaaacaaaaacagctgATGTACTGTACAGTCCAACCACCCCCTACTGACTACCAGCCTCCCACCAGCAAACTTATTTTTGGTACAGCTGTGAACTCAGCAGCAGGGAGGGGCTGGGGGGTCAAAGGCCATTGTATGAGCAACTAATGAGTTTCATATAGAAAGGGAGAATGAGGTCAGTGCTCTGGGGAGATGGTGGCCTCCCGTTGAGAGAGAGTCACTGGGACTGGTCTAGGACTGGTCACCATCTTGTCACCGTCTGAGGCTGGGCACGCTTCATTCTCCCCCCACCGCTGACCCACATATCTGCTGGAGAGGAAACTCGTCAAGCATTGCATCAGGGTCAAGGAGGTGAGCTGCTGGTGGCAGGAGTTGGGGCGGTGTGTTGAGTTCCCCTCTAACTTGGTTCATATAGTCATATATAATCATGTTCACATTTCATGCTCCATAAGATACAGGCATACAAAACCAGAGGACGCATCGTTTGCGTTACTTTGCAATTAAACATATTGCCTTCATTAGAGGCCCTCGCTGCATTGGTATTAAGGGAACAGATTTGCTATGTGGTATCAATTATTAATtcatgtgtgaatatgtgtgcaTACTGGAAGCGAGTTTGATAAATACAGTCCTGCCTATGTTTATTGAAGGATATGATTAAAAAAAGACTTGTAGGCCACAATATGGCAAGTGCACTTCCCTCCGTAACTCTACATGCAATCATGTATATGAGTAGAttatttccaaaatgctatatCCACCCATTTTTCACATTGGtgtttttcatcagaaatgatcACATATGGTTTACCTCCACGTGTGTATATCTGACTGTCCTCAGATTTTCTTTGTTTCATTTATAGATGTGtatgaaaatgttttttgttgttgctcaacgctatatatccattgttCAGCTTGGAATAGAATGTTCGTATCCTGTACATTTGCCTGTGGTATGTGGTTGTATCACCAAAGCGACCTTAAGATGAACGCACTTAcggtaagttgctctggataatagcatctgctaaatgactcaaatgtcaaacGTTTAACTTACAGATCTGATGTCACTGTTTTGAATCTTTTCATTTGTTTCATGTTtttattgatgtcacaaatgtatcaattgtacagttctttatttaaaaaaaaaatgtagttatttgttacatttgactgtaaaacctagcagtactacttacTTCTCTGAGGCGGATACACACTGTACGCTgaaaatacaaaacattaagaatacccactctgtcacgaatattaccgaaggtgactccccttcttgttcgggtggcgctcggcggtcgtcgtcgccggtctactagctgccaccgatcctttgttctgtgttcgtttggttttgtctaattggtttcacctgtttcttgtttggttATTAGGGTGGGGTTATATAAGTTTGTTCAGCCTgcttctgtttgtgcgggcttgttcgtATGTATGTGTTCAAGTGGTTGTGTTTGCATTTCGGGTTTCTCGCTGTCCTTTATTTTTTTCACATTATTGTTCCTGTGATTTATtctggacattaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU596652 True 2391 lncRNA 0.43 1 58081003 58083393

Neighbor

gene id symbol gene type direction distance location
fgf19 LOC106586997 coding upstream 137319 57941240 ~ 57943684 (+)
LOC110526226 LOC106587136 coding upstream 144737 57928778 ~ 57936266 (+)
fgf3 LOC106587135 coding upstream 159933 57916345 ~ 57921070 (+)
LOC110526223 LOC106561972 coding upstream 217247 57842994 ~ 57863756 (+)
LOC110526218 LOC106587128 coding upstream 320063 57744132 ~ 57760940 (+)
LOC110526232 dhcr7 coding downstream 68447 58151840 ~ 58158582 (+)
LOC110526234 LOC106587141 coding downstream 135496 58218513 ~ 58228939 (+)
LOC110526233 LOC106587142 coding downstream 145014 58228407 ~ 58236139 (+)
LOC110526235 LOC106586999 coding downstream 152867 58236260 ~ 58243577 (+)
LOC110526238 LOC106587144 coding downstream 177110 58260503 ~ 58263649 (+)
G526515 NA non-coding upstream 40536 58035295 ~ 58040467 (+)
G526491 NA non-coding upstream 74542 58006238 ~ 58006461 (+)
G526476 NA non-coding upstream 98534 57982243 ~ 57982469 (+)
G526462 NA non-coding upstream 129259 57951533 ~ 57951744 (+)
G526447 NA non-coding upstream 135801 57943815 ~ 57945202 (+)
G526536 NA non-coding downstream 14537 58097930 ~ 58098176 (+)
G526538 NA non-coding downstream 17862 58101255 ~ 58101493 (+)
G526542 NA non-coding downstream 21680 58105073 ~ 58105324 (+)
G526544 NA non-coding downstream 23132 58106525 ~ 58106737 (+)
G526574 NA non-coding downstream 61229 58144622 ~ 58146334 (+)
G525972 NA other upstream 262723 57817824 ~ 57818280 (+)
G525912 NA other upstream 370663 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 438521 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 453384 57621795 ~ 57635241 (+)
G525861 LOC106587122 other upstream 474636 57604108 ~ 57606367 (+)
G526547 NA other downstream 27513 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 188686 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 235527 58318920 ~ 58408967 (+)
G527450 NA other downstream 695330 58778723 ~ 58779017 (+)
G528653 NA other downstream 1688315 59771708 ~ 59772084 (+)

Expression


Co-expression Network