G526506 (LOC106587140)


Basic Information

Item Value
gene id G526506
gene name LOC106587140
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58194139 ~ 58200097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU596646
CCAGCATGGATCGTTAACACACTCAACAGGAGGTGAACACACACCGCAAATGTATAAAACCTTCACGTTCTAcagcaaaacaaaataaaaacacacacggAATGTTATTCAAAGTACAAAAAAAGAAATCCTACGAAGTTGAAAGAAGAATTCGGAGAAAAAAAACGGCACATAATTAAACAAACTGAATGAATATTCAAAATAATCATGATAATCACACAGACGAATTAACTTTTTTATTTTCATCCCATCAATGTTAATAGGCGTGgtgaggtttaaaaaaaaaaaaaaaactactcaCTGAAGCATTACCCGGGTAGTAACTTTCACGCAACATTGCTGTAACGTTTTTAAAACATTTGTGAGATGTAACGCTGCGCCTAGTAggcttttagttgcctggttttcCAAGGACCTGGGAGGAGCAGTCTACCGTAAGTCAGTTGAGAGTTAATAGCGTGTGGTTTCAGTTGTTCAAGCTCAGCTGAGTGAGTAAGGTGAGATGCACTCTGGGATAGGGATGCACACCCACTGAGTGTGTGTCTGGAGTCGAGACTTCGACGACTCAACTGAAGTGCAATGATCATTTCCCCCGCCAACCTCTGGATCTTGACAGACATCAAACAGAGGATTGAGACATCGAACGCAGGGATCAAAATGAACCCCTTTCTCTTGACATCGTGTCATCTTTCTAACagatctctctttttctccacaAAGAGCAGTCTGGCATCCTGTGTGGTTGTTGattGCAATGAATAACAAAACCATTTTGTCAAGCTAGTGGTTAACCGTTAGACACAATATGAAGCAACTGTACAGGATGCCTGTGAAATGCACTGGCCACAAACAACAACTAACGGAATATATAGAACCAACATAGTCTGCTGGGTTCCTCTCTATCTTGGATACAAAACATCAGACCGCCTTGGCTGCTCTGCTCCCTCCCTGGCCATGACAGAGCTGCGGGGAGGGACAGAGTGGGATTGTGGGAGGAAGGAAGCATCCGGATCCTGGCCTAGGGCTCAGCCTGCCTTCCTGCTGGGCCGCAGCAATGACAGCATGGAGGACAATGCTGCACTTTGTGAGAGAGACCATTGTTACAGTCCCCCTGGGGCCAAGGCAGGGCCTAGACGGGCTGCAGAGAAGACCAGACGAGCGCAGAAGAGTAGAGTGGtgttgaacagagagagagagagcaagtagTGATACTGTAAGGCTAGAGTAAAGGTACTAGAGGCGACTACAGAGTAATAGCACTCGAAAAAAACTCACACCAAACACATACACAGAGGGTGTTGATACCTCAATCAATCCCTGACATAATATTTCATAACTGTATTTTTCATTGCTGTATTTTTCATTGCTGTATTTTTCTTAACTGTATTTTTCATTGCTGTAGTGTTCCAAACAATTCTCATGGAAAACAaaagaaaaaaggaaaaaaacaaaGCAGTCTTGGACTCAATCCCAGAGTGCTCTTATAAAGGCTCTAGTTGCCTTCAAGCAGGCAGTTTCTTTGTGAAATTTCCCACATTTCCGTTGCATCTGCTTGAGCTAGTTCTACGGCAGGCATCGTTGGGGACTACAGTGTCTTATTGGGGAGACGTCTCAGACACACCGAGAAACAGTTGGAAACTAAATCCACACTAAGAGACAGACATACTAGGAACACAAACAGCCACAAAGGTCTGGGACTCGCAGTGATAGTCTACTCCATACAGGCACAAAGACACTAGCTATCCCAGATAAAGAGAGAGCAAGTAAGGCATGGACTGGGTCTCAGACAATGAGTGAGCATTTTTTGAGTTTGTCCAGATACCTTCTAGGCCTGCTGATGGTGATTTTTCCATTGATTTGGAcaggatgggtgggtggatggggaCGGGTGGGGTAGtcaggggggagaagagagagggaaggcttTTACCTCTGATTAAGTCCCCTCTCAACCTCGCAGCACAATGAGAGGGCAATGGGCAGAGGCGGTCTCCTAGCAACCCCATCGAGCGGGGATCCATCACTGACACACGCAGGACCTCTCATGACAGTGATTCCTCTCCGCTGTCAATAATATTTATAATAGCCCTTTTAACTGGCCTTCCCCCATCTCAGTGGTATTATTGAAGCATCTCACGCATCCTCAGTGCACCTACCCCACCCCCGTCGATGCCCCAGACAAACATGTTCATCACAACTACTGTTTGACGGATGGTAAACAGTGAAAGCTGCCAGGTATCTGAGTGTAGGGAAATGACTTATCTCTACCTCACAGCAAATCCTTTCTCAGTATCTTTTGGGCTGCTAGTAAATCTACCAGACGTATGCATACTGTACATGCGCCTTTGTGGTCGAAGACAAGAGCATAGGGAATACATAACAATGTGAGAAAtaaagaagtttacatacactgcgTGCTACTATTTCCCTTTGGTATCAGAGAATAGACTCCACAGTTCCTTCTCTGGAGCTAGTGAATGTGGGTCACGGGATACAGTGCCAATAATAATCCTTACAGGAAGAGCCCCGCAGtgagctcctctccctcactccccctacTGCCTTACTCAGCTGTAGGAATGGACCTCTGGTCTCTCACTCAGCCTGCCTTGCAGCCTCCCCAACCCCCTCCAACAATCACCAACATCTGGGTAAAACAATCCAGGAACAGACTGTAAGACTTCCCAAACACTTAACAGATAAGGTTTCTGTCTTTGAACTCCCTATGTAGATTTCTAGCCTCTCACGCCCTCTCTcgttccccttctccctctggtAAAGTCTGTCTCTCCGTTTGGACCTCTCAGAAAATGAAAAGAAGCCTGGTTTGGTCCAGAGAAGGACTAAGATTATAGGCTGGAGGTTAACAATATTTTAAAACACCTGCTATTTTAAATGAGAGGATGTGCTGACATTTTCTGATTATGTTCAGAGGAATACTTCTCTAGACCAAgctcagagcgagagagagagagagagagagagagagagatagagagagagagagaaagccctcCAATCTATTTAAATCTAGGGGAGTAGGGTATTACAGAGAGAGGGCTCATTGTGTGGTGCATTACTTGAATTatatttattaaaacatttcaGGAGGCTGAAGTATCGCTGGTTCCAAGTATTTCTCAGATGAAAAGTGTCAGTCAATCTCTTACCTACTGGGCACAGACGTTATTTCAAACTCTAGTTTGATTTAtattttggttgagttgtcaactaacttcaattcaacatgaaatcaacaaaacatttcagcatgtcattcccagctagcacataatgttctgagaatcACATTTCTttgagcttggtgagagcgtggttgtcctctGGTTATTTTGCATAAAACCTTCCCAAaatgttctgggaatggtgcagggtACCCAGCTAGCTCATAAAGTTCTGAGAACCTTATATTTCTTAGGTTGGAATGTCAGTACTGTTTCCTATAGGTTTcatcatggttctatttaaagtaatgttctccaattgttcagagaacgttaagaaacaaagttcttctgtgggaatttcggTACTTCAGAATAACTTTTTCGACAGGTTTTCTCATGGTTCTATTGAAAGCTATGTTCTCAGAACGtccagagaacgttaagaaacaacgttcttccgtgggaatttcagtacttcagcataaagttttctgcaggtttcctcaAATTTCTATTTAAAGTAATCTTCTCAGAAACATTAATAAAAGGTTCCATAAAATCCCACAATAAAACATTAGTAACGTTCAAagaacgttctaagaatgttatttaaaaacatacattccgttctcagcatcAATGGACCTATAAGTCCATGGAGAGAGAGTAGAATATCATAAGTTCCTAAGAAGGtgaatttccatgtgtcctatctgtacatggagttcaaaacagttaacctaagATAGCAGTAGTATTAAAAGTCTTATTTCCAGAACtttatttaattaccttcaaataacctaCTATTTCCACCTTAGAACATTAATAAAACCTCacaggaaaactttcagggaaccatagtaaaacgttctcacaacctccctgcaacctacaaatgaacgttcccagaacaggcaaaatgttcacttccattctcagaacgtttaaaaGACATTCTGTTTTACTATTCAGGAAATGTTTGGCTTCTTTCCCAGAACCAATGGATAACCAAAAACGTCTGTTCCCACAAcctccaaggaaccaaatgtgctagctgggttggatttaggttaaaagtttggTGGAAAAATTTGTTTCCCTTACGTggtgactttttgcaaatccaatcatttTCCCACCTTGATTCAACATCCTCACATTGAAATGATGtgaaaacaacattgattcaatttGTTTATGCCCAGTGGATATTCGTTCAATACTCTCTCCTACCTCAGCACCTCAACTGCTCCTCCAAGTCCCACACAGAGGCATTTCACAGTGAATTGCCTTtgtcttaaaaaaataaaaaaaaaataggaaaGAAGCACCTTTCTTTTCCAACCCTTCCCTAATCATAACAACTCAAACTCTCATTACCACGGTTAATAGGACCGAAACAAGGTTAGAAATTAAAAAAAGGCACCACGGGACCATGTTTGGTTGAATGAGCCAAACGTTTGTGAAAGTTGTCTATAAAGTATGGACAAGATTTCCAATATCATCCATGGTGCCCTTGAATTAAAAACAGATGAGAAAACCAAAAGTTCAGTTAGTGGCTGTTCAACATGGAAGGTGTAGTGACAAAAGGCATTGGGTGAGTTGCAGTTCAAAAAGTGACACTATTTACACTGATCTCTCTCCTGTTGATACCTGACGTGCAGTAGGCCTGCTTCAGCTGTAGGAGtcctgagggaggaggaggtgggagggaggagtgggagagggatgggggggggctCTCTGCTTTTCACAGAATCAAACCTCCTTCACTCCCTTCATTCTgtgctgcagtctctctctctatcgctctgttAAGTCTCTGTTTTCCTTTCAAAGGCTAATCCAAGAACCAGATGGAAGTTATCTCAGAGAAACCCACTGTaacgggcagagagagagagagaataatgcaGACACTTCCTGGTTTAGAAAaaaagactcacacacacacaatatgaaccaaacaaaaacaaaaaacaatgtgCAAACTTTCTGATATAAATAGACTACAGTCAACTCATTGGGTAGAGCACCATGGGAGGGGAACGAGTTAGGTGTATGTGTTtatgtttgctgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgcgcgtgcgtcatgtgtgtgtatgtatttgcaCGTAAGTCTCTACTACCATGTTTTGGATGAGAAGATAGAGATAGAGGTATGAGGGTAGGGTTcaggttgtggggggggggggggggggtcattaagTGGGTCAGAGGTCACACCCAGTCCTGCATGGAGCGTTTGCAGTGGACCAGAAGTTTGGGAGTTCCTTTCCTCTTCAGTGTGTTGATGATGGCGTAGATCAGTCCCAGGATGCACAGCACCAGGACCAGGGGTACTGTCACCATGATGATGTTCATAGTGCGCGTCTCACTCTCGTCGATCTTCAGCACCACGTCCACCTCGttggtctcctcttctctctcgtcCTTATAGTCTACATCATTGGTACGGTCCTGATCCTTGTCCCGCTCCTTGTCCTTCTCCTTGTCCCGGCCTGCGTCAGGGTTGAAGGGCGGGCGATCCACTTCGGGGACCTTGCGGCCTGCGTCGgtatccctgtctctgtctgggtccaGGTCCACACTGCAGCCCATGAAGTCCCTCAGGATGGATTTAGGGTAGCCCGGCTCACTCTTCATCCTGTGGTTGTCAAACTTCCAGTATTTGGATCCCTTGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU596646 True 5912 lncRNA 0.44 2 58194139 58200097

Neighbor

gene id symbol gene type direction distance location
LOC110526232 dhcr7 coding upstream 35557 58151840 ~ 58158582 (+)
fgf19 LOC106586997 coding upstream 250455 57941240 ~ 57943684 (+)
LOC110526226 LOC106587136 coding upstream 257873 57928778 ~ 57936266 (+)
fgf3 LOC106587135 coding upstream 273069 57916345 ~ 57921070 (+)
LOC110526223 LOC106561972 coding upstream 330383 57842994 ~ 57863756 (+)
LOC110526234 LOC106587141 coding downstream 18792 58218513 ~ 58228939 (+)
LOC110526233 LOC106587142 coding downstream 28310 58228407 ~ 58236139 (+)
LOC110526235 LOC106586999 coding downstream 36163 58236260 ~ 58243577 (+)
LOC110526238 LOC106587144 coding downstream 60406 58260503 ~ 58263649 (+)
LOC110526933 LOC106562045 coding downstream 144048 58318920 ~ 58408967 (+)
G526591 NA non-coding upstream 12350 58181586 ~ 58181789 (+)
G526589 NA non-coding upstream 13770 58180160 ~ 58180369 (+)
G526582 NA non-coding upstream 30082 58163745 ~ 58164057 (+)
G526581 NA non-coding upstream 34253 58159336 ~ 58159886 (+)
G526574 NA non-coding upstream 47805 58144622 ~ 58146334 (+)
G526603 NA non-coding downstream 6624 58206721 ~ 58207112 (+)
G526604 NA non-coding downstream 7269 58207366 ~ 58207600 (+)
G526606 NA non-coding downstream 9187 58209284 ~ 58209516 (+)
G526607 NA non-coding downstream 9906 58210003 ~ 58210304 (+)
G526608 NA non-coding downstream 10426 58210523 ~ 58210804 (+)
G526547 NA other upstream 81320 58110906 ~ 58112819 (+)
G525972 NA other upstream 375859 57817824 ~ 57818280 (+)
G525912 NA other upstream 483799 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 551657 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 566520 57621795 ~ 57635241 (+)
G526628 LOC106587143 other downstream 71982 58272079 ~ 58272836 (+)
G527450 NA other downstream 578626 58778723 ~ 58779017 (+)
G528653 NA other downstream 1571611 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3771639 61971487 ~ 61979527 (+)

Expression


Co-expression Network