G526640 (LOC106587145)


Basic Information

Item Value
gene id G526640
gene name LOC106587145
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58285932 ~ 58287403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU596797
TAATTTGCTTTATTATACAACTCCAAATATTCAGATCATTAGGCTATTCACATACAGACAGTGCTTTGAGGAAATTACTGTTTTCTGTTCTCTGCATGATGTTGAacagaccaacaacaacaaaaatatgtacACTATGGCCAAAACTTCACTGGGCCTCTCATTTGACAAGACCCCTTTTTTACCCTTTTAGTACATAAACGTCTTTAGACTGTACTTACAATGTGTGACAATTGGTACTGTGTTAAGACCAGACATGCAATTAGACATGTACTGTTAAAAGGCTTGTTGCGCGAGATGGGCAACAAAATCAAAGGGTACCCTGAGGGGAATGTGACAATGACCTATAGGTTAAAGGATTGAACAGATATACAAACACAAACAATCTGCAAAAAATGAGACTTAAGTTCAGTTATTTTATCTGATAAACCAACAAATAATAATCTTGTTACAAGATACCAAGTCAGACACTGCTGAACAGGACAATCCAAACTATGTTGAACATATAGTTTTGTACAATATGTACTTTACAAACAGGCTGTCAAAAGACGAGCTAGATTGTGGCACCACATAATAAccccacagagcagagagagggccAAAAGTCAtgacacaacatagaaaacgtaGCATCTAATATTGAACAAACTGTTTTCTGTGTGTTAGCTCAGTAGTTATCACTCATTATCGCTAGTGATGGGTCATAAACATGATCAAAGCAGATGAATCATCCACACAGCTATTCACTTTCATTGGTTTCTCTCCAACACTATTGTTTCTATCATTTGACTGTCACAGAAGCTTCCTCTaatcaaacatttatttaacatcAACTTCAGAGGTAGCATCACTCTGATTGAATACTCAAGAGTTAACAAAGGCATGGACAGGTGTGTCCCCAACATGGATCTCTATGGATATAGATGAGTCATTGCAGCTGTTCTGATGAAATTAGGAATCTCAGGTTCTCCAATGTATATTCACTCTGACTGACCGTGGTCTGTATTAGACTTGAGTGAGTATAGATTAGATTTGGTTAGGGTTCCTCAGCTCTTCACTCCAAGGCTCCAGTCTCAATTGACATTTGAGTCTCAATTGACATTTGATACATTTGGTTAGGGGCCTTTCACTACACAACCACCATTCTAATAACCATCCATCCACCTTCAGTGAGACATCTGTGAGGGGCCACGATTGGTGGCAATGGACATCATACCAAGGGTGGTAGCTACCAGGGAAGCTGCGTGTTCCCCTAAACAGGTACAGGTGTCCAGTAGGGAACGTGTGCGAGCGGTCAGTGTCAGAGAGGCAGAGATGACCTCATAGGCCTCCAGGGGAAGGGCCCGCCGTGAGATGAGCACATCCAGTAGGTTGTTGAGTCGTCCCTCCGTCATGCCTCGAATGATGCCCTCACGCCTCTCGCGCAGGATACGACAACAGCTCACCGCCATCGGAGTCGGAGACACACACCG

Function

NR:

description
receptor-interacting serine/threonine-protein kinase 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU596797 True 1472 lncRNA 0.42 1 58285932 58287403

Neighbor

gene id symbol gene type direction distance location
LOC110526238 LOC106587144 coding upstream 22283 58260503 ~ 58263649 (+)
LOC110526235 LOC106586999 coding upstream 42355 58236260 ~ 58243577 (+)
LOC110526233 LOC106587142 coding upstream 49793 58228407 ~ 58236139 (+)
LOC110526234 LOC106587141 coding upstream 56993 58218513 ~ 58228939 (+)
LOC110526232 dhcr7 coding upstream 127350 58151840 ~ 58158582 (+)
LOC110526933 LOC106562045 coding downstream 56742 58318920 ~ 58408967 (+)
LOC110526241 LOC106587148 coding downstream 167045 58454448 ~ 58505295 (+)
LOC110526245 LOC106587150 coding downstream 353251 58640654 ~ 58732690 (+)
LOC110526935 LOC106562040 coding downstream 527080 58814483 ~ 59000538 (+)
tshz3b tshz3 coding downstream 1055716 59343119 ~ 59376681 (+)
G526639 NA non-coding upstream 245 58285376 ~ 58285687 (+)
G526627 NA non-coding upstream 14455 58270629 ~ 58271477 (+)
G526625 NA non-coding upstream 17982 58267668 ~ 58267950 (+)
G526624 NA non-coding upstream 18449 58267268 ~ 58267483 (+)
G526511 NA non-coding upstream 29098 58249053 ~ 58256834 (+)
G526641 NA non-coding downstream 4831 58292234 ~ 58292573 (+)
G526648 NA non-coding downstream 17093 58304496 ~ 58304738 (+)
G526649 NA non-coding downstream 17877 58305280 ~ 58305599 (+)
G526991 NA non-coding downstream 122715 58410118 ~ 58410438 (+)
G526995 NA non-coding downstream 124938 58412341 ~ 58412592 (+)
G526628 LOC106587143 other upstream 13096 58272079 ~ 58272836 (+)
G526547 NA other upstream 173113 58110906 ~ 58112819 (+)
G525972 NA other upstream 467652 57817824 ~ 57818280 (+)
G525912 NA other upstream 575592 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 643450 57639437 ~ 57642487 (+)
G527450 NA other downstream 491320 58778723 ~ 58779017 (+)
G528653 NA other downstream 1484305 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3684333 61971487 ~ 61979527 (+)
G531406 NA other downstream 3862370 62149773 ~ 62152218 (+)

Expression


Co-expression Network