G527075


Basic Information

Item Value
gene id G527075
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58509673 ~ 58510015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU597253
ACTGTTCAAAGCGCCTCCTCAGTGCTCCAACTAAATCCACATAATCACGTCTGCAGGGCTAATCAATATCAAACAGGACAGAGCATCATCCGTGAGGCCAGCATGAGCTAACAGTTCAAACTGAGCATGAAAAGCTTCCCAATCCCCCTTACCGGATTACTTCGGGGTCTTAACAGATACAGATGCAGTCGGGGACAGGGCGCCGCCATGTTTGTTTACATCCTGAGCTCCAGCCTCTCGTCACGCAGCGTCGACGTCACCCCTTCGGTCCGCCCCCCAGAATCTGCGCGAAGCACAGTGTTGACAAAGCACTTAGGTCCGCTTCAGCCACCATCCTTCTAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611608

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU597253 True 343 lncRNA 0.53 1 58509673 58510015

Neighbor

gene id symbol gene type direction distance location
LOC110526241 LOC106587148 coding upstream 4378 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 100706 58318920 ~ 58408967 (+)
LOC110526238 LOC106587144 coding upstream 246024 58260503 ~ 58263649 (+)
LOC110526235 LOC106586999 coding upstream 266096 58236260 ~ 58243577 (+)
LOC110526233 LOC106587142 coding upstream 273534 58228407 ~ 58236139 (+)
LOC110526245 LOC106587150 coding downstream 130639 58640654 ~ 58732690 (+)
LOC110526935 LOC106562040 coding downstream 304468 58814483 ~ 59000538 (+)
tshz3b tshz3 coding downstream 833104 59343119 ~ 59376681 (+)
LOC118965037 NA coding downstream 1333613 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 1341147 59851162 ~ 59861646 (+)
G527028 NA non-coding upstream 72850 58436619 ~ 58436823 (+)
G527020 NA non-coding upstream 77493 58431902 ~ 58432180 (+)
G526995 NA non-coding upstream 97081 58412341 ~ 58412592 (+)
G526991 NA non-coding upstream 99235 58410118 ~ 58410438 (+)
G526649 NA non-coding upstream 204074 58305280 ~ 58305599 (+)
G527076 NA non-coding downstream 193 58510208 ~ 58510632 (+)
G527104 NA non-coding downstream 1523 58511538 ~ 58511760 (+)
G527105 NA non-coding downstream 1923 58511938 ~ 58512177 (+)
G527113 NA non-coding downstream 18106 58528121 ~ 58581884 (+)
G527157 NA non-coding downstream 87797 58597812 ~ 58600119 (+)
G526628 LOC106587143 other upstream 236837 58272079 ~ 58272836 (+)
G526547 NA other upstream 396854 58110906 ~ 58112819 (+)
G525972 NA other upstream 691393 57817824 ~ 57818280 (+)
G525912 NA other upstream 799333 57703458 ~ 57710340 (+)
G527450 NA other downstream 268708 58778723 ~ 58779017 (+)
G528653 NA other downstream 1261693 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3461721 61971487 ~ 61979527 (+)
G531406 NA other downstream 3639758 62149773 ~ 62152218 (+)
G532259 NA other downstream 4310405 62820420 ~ 62822616 (+)

Expression


Co-expression Network