G527113



Basic Information


Item Value
gene id G527113
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58528121 ~ 58581884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU597294
TGCCTTTTTTACAGTGTTGCCTTTCAAAGCCAAACATGAATTTGTAATTTTACTCAGCAAGAGTTTTAAAAAGTTGAGTTAATAAACTAACACATTAGCTTAAATTCTGTTCCTAGTTAACCATGAATGACTGTGTACAAAGATTGAATGTCAAAAAAGACTAAGAAAACCTATTCTGGTATCAATGTCAGTCAAGAGTTTTACAGTCACCCGTCTATGAGTTAAGAAAAAAACGTGTTTCAGGTGATGGTTGACAAAGTGAGATGTTCTCAGTTCTGCTCCAAATCCCTGACACAATGTGTCTTCCCGGAGGGTCGTCCAGATTCTAATGTCGCTTAGGCACCATGTAGTATAGGGGGGATGCAGGTGTGTGGGACATACAAAAATGCTCTTCATCTACGATGTTATGATTGACTCCTTCAAACAATGTCTCTTTGATCTGTTCATTGTAGGTGGAAATGGGGTCAGAGGGCAGTGGCATGTAGAAGTGTTGGTCTGACAATTACCTTTTGAATTCAGAAACAATCAATTGTGTACGAAATTCGCCTGTCGAATTGCAATGGTTGGTTCTGACTGTAGCTTTTTCAGAGATTGTAGCTCCTCTTTGCTCAGGTTGGGTTTCTTCATTCTTTTATTCTGTTCACACTGAACTTTTTTCACACTGAACCTCGTCTTCCAAAAGGCAGCAGTATATTTCCACATAATGATTTCGATGTTTGGGACTATACtgtatttccttttttttttttttaatggcacacaagaaaatacaaaacaatatgaTCACAAAGTAAAAGGAGAACAAAAACAGCATGTGCAGAAGAGGTAGAAAACCCCAGAGAGGCTTCTGAGGCATCTCCCCCTTTCAAATTCTTATGGAATTATTATTTAAACAAAGAAAAGGTTTACACAATCTAAAAATGTTCATTTCTAAACATTGATTTCCTATCCCTGCAAATATGGTGTTATGCTAAGGTACTATCTACTTGTAGGCCTAATGTTCTCTCAGGTAGCCCATAAGCTAggaggttatatactgtacacctATTCTGCAAAAACCAAAAGGGAATTCAAATTCTCCAAAATGTTAGATGGACTAAAAAATGGCATATCTTTCAGAGGGTTTTTGATAACAGTCAAAGAAACAGAAAGGCACCAATTCACAGTCGACCACATCACCTTACCCTCGTGTACGACGGTGAGTGATCGATTGGTTATCCAAACGTATTTGATTATTTTCAGAGATGAAAATCATTTGAACCTAATAG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU597294 True 1268 lncRNA 0.37 2 58528121 58581884

Neighbor


gene id symbol gene type direction distance location
LOC110526241 LOC106587148 coding upstream 22826 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 119154 58318920 ~ 58408967 (+)
LOC110526238 LOC106587144 coding upstream 264472 58260503 ~ 58263649 (+)
LOC110526235 LOC106586999 coding upstream 284544 58236260 ~ 58243577 (+)
LOC110526233 LOC106587142 coding upstream 291982 58228407 ~ 58236139 (+)
LOC110526245 LOC106587150 coding downstream 58770 58640654 ~ 58732690 (+)
LOC110526935 LOC106562040 coding downstream 232599 58814483 ~ 59000538 (+)
tshz3b tshz3 coding downstream 761235 59343119 ~ 59376681 (+)
LOC118965037 NA coding downstream 1261744 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 1269278 59851162 ~ 59861646 (+)
G527105 NA non-coding upstream 15944 58511938 ~ 58512177 (+)
G527104 NA non-coding upstream 16361 58511538 ~ 58511760 (+)
G527076 NA non-coding upstream 17489 58510208 ~ 58510632 (+)
G527075 NA non-coding upstream 18106 58509673 ~ 58510015 (+)
G527028 NA non-coding upstream 91298 58436619 ~ 58436823 (+)
G527157 NA non-coding downstream 15928 58597812 ~ 58600119 (+)
G527393 NA non-coding downstream 158616 58740500 ~ 58740805 (+)
G527444 NA non-coding downstream 191468 58773352 ~ 58773630 (+)
G527446 LOC105416325 non-coding downstream 193374 58775258 ~ 58775494 (+)
G527447 NA non-coding downstream 194799 58776683 ~ 58777182 (+)
G526628 LOC106587143 other upstream 255285 58272079 ~ 58272836 (+)
G526547 NA other upstream 415302 58110906 ~ 58112819 (+)
G525972 NA other upstream 709841 57817824 ~ 57818280 (+)
G525912 NA other upstream 817781 57703458 ~ 57710340 (+)
G527450 NA other downstream 196839 58778723 ~ 58779017 (+)
G528653 NA other downstream 1189824 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3389852 61971487 ~ 61979527 (+)
G531406 NA other downstream 3567889 62149773 ~ 62152218 (+)
G532259 NA other downstream 4238536 62820420 ~ 62822616 (+)

Expression



Co-expression Network