G527446 (LOC105416325)



Basic Information


Item Value
gene id G527446
gene name LOC105416325
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58775258 ~ 58775494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU597649
ggcatgaaaagagcacttctcagccttcacaaaaaggcaattctctaaaaggcgctggaggacatgtcgaacgtgctgaacatgaatctggagtgacggtgaaaaaatcaggatatcgtcaaggtaaacgaaaacaaagatgttcagcatgtctctcaggacatcattgactaatgcctgaaagacagctggagcgttagcgaggccgaaaggaagaacccggtattcaaagtgccg

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU597649 True 237 lncRNA 0.46 1 58775258 58775494

Neighbor


gene id symbol gene type direction distance location
LOC110526245 LOC106587150 coding upstream 42568 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 269963 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 366291 58318920 ~ 58408967 (+)
LOC110526238 LOC106587144 coding upstream 511609 58260503 ~ 58263649 (+)
LOC110526235 LOC106586999 coding upstream 531681 58236260 ~ 58243577 (+)
LOC110526935 LOC106562040 coding downstream 38989 58814483 ~ 59000538 (+)
tshz3b tshz3 coding downstream 567625 59343119 ~ 59376681 (+)
LOC118965037 NA coding downstream 1068134 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 1075668 59851162 ~ 59861646 (+)
LOC110526261 LOC106562006 coding downstream 1392011 60167505 ~ 60175549 (+)
G527444 NA non-coding upstream 1628 58773352 ~ 58773630 (+)
G527393 NA non-coding upstream 34453 58740500 ~ 58740805 (+)
G527157 NA non-coding upstream 175139 58597812 ~ 58600119 (+)
G527113 NA non-coding upstream 193374 58528121 ~ 58581884 (+)
G527105 NA non-coding upstream 263081 58511938 ~ 58512177 (+)
G527447 NA non-coding downstream 1189 58776683 ~ 58777182 (+)
G527451 NA non-coding downstream 3875 58779369 ~ 58779600 (+)
G527452 NA non-coding downstream 5090 58780584 ~ 58783386 (+)
G527550 NA non-coding downstream 121369 58896863 ~ 58904473 (+)
G527589 NA non-coding downstream 207903 58983397 ~ 58984068 (+)
G526628 LOC106587143 other upstream 502422 58272079 ~ 58272836 (+)
G526547 NA other upstream 662439 58110906 ~ 58112819 (+)
G525972 NA other upstream 956978 57817824 ~ 57818280 (+)
G525912 NA other upstream 1064918 57703458 ~ 57710340 (+)
G527450 NA other downstream 3229 58778723 ~ 58779017 (+)
G528653 NA other downstream 996214 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3196242 61971487 ~ 61979527 (+)
G531406 NA other downstream 3374279 62149773 ~ 62152218 (+)
G532259 NA other downstream 4044926 62820420 ~ 62822616 (+)

Expression



Co-expression Network