G527447


Basic Information

Item Value
gene id G527447
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58776683 ~ 58777182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU597650
cgctcaatgcgaatagcgagttcaatcaaggaatccacgctggaaggaacctcccgggagagaatctcatcctttacctctgcgcggagaccctccagaaaacgagcgagcaaagccggctcgttccagccactggaggcagcaagagtgcgaaactcaatagagtagtctgttatggatcgattaccttgacatagggaagacagaaccctggaagcctcctccccaaaaacagatcgatcaaaaacccgtatcatctcctccttaaagtcctgatactggttagtacactcagcccttgcctcccagattgccgtgccccactcacgagcccgtccaataaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggctggagagaaaacacaatatcacactgggtgaggaacgagcggcattcagtgggctccccagagtaacacggcgggttattgattctgggctccggagattcgaa

Function

NR:

description
PREDICTED: C-Jun-amino-terminal kinase-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU597650 True 500 lncRNA 0.53 1 58776683 58777182

Neighbor

gene id symbol gene type direction distance location
LOC110526245 LOC106587150 coding upstream 43993 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 271388 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 367716 58318920 ~ 58408967 (+)
LOC110526238 LOC106587144 coding upstream 513034 58260503 ~ 58263649 (+)
LOC110526235 LOC106586999 coding upstream 533106 58236260 ~ 58243577 (+)
LOC110526935 LOC106562040 coding downstream 37301 58814483 ~ 59000538 (+)
tshz3b tshz3 coding downstream 565937 59343119 ~ 59376681 (+)
LOC118965037 NA coding downstream 1066446 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 1073980 59851162 ~ 59861646 (+)
LOC110526261 LOC106562006 coding downstream 1390323 60167505 ~ 60175549 (+)
G527446 LOC105416325 non-coding upstream 1189 58775258 ~ 58775494 (+)
G527444 NA non-coding upstream 3053 58773352 ~ 58773630 (+)
G527393 NA non-coding upstream 35878 58740500 ~ 58740805 (+)
G527157 NA non-coding upstream 176564 58597812 ~ 58600119 (+)
G527113 NA non-coding upstream 194799 58528121 ~ 58581884 (+)
G527451 NA non-coding downstream 2187 58779369 ~ 58779600 (+)
G527452 NA non-coding downstream 3402 58780584 ~ 58783386 (+)
G527550 NA non-coding downstream 119681 58896863 ~ 58904473 (+)
G527589 NA non-coding downstream 206215 58983397 ~ 58984068 (+)
G527594 NA non-coding downstream 218192 58995374 ~ 58995705 (+)
G526628 LOC106587143 other upstream 503847 58272079 ~ 58272836 (+)
G526547 NA other upstream 663864 58110906 ~ 58112819 (+)
G525972 NA other upstream 958403 57817824 ~ 57818280 (+)
G525912 NA other upstream 1066343 57703458 ~ 57710340 (+)
G527450 NA other downstream 1541 58778723 ~ 58779017 (+)
G528653 NA other downstream 994526 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3194554 61971487 ~ 61979527 (+)
G531406 NA other downstream 3372591 62149773 ~ 62152218 (+)
G532259 NA other downstream 4043238 62820420 ~ 62822616 (+)

Expression


Co-expression Network