G527550


Basic Information

Item Value
gene id G527550
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58896863 ~ 58904473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU597758
tgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttccttctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtccaatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgattatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatagtccttccatttcaatattatcgcttgcacagtactccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacagcagtatctcggacctgcctggtgtgttccttgttc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU597758 True 561 lncRNA 0.44 2 58896863 58904473

Neighbor

gene id symbol gene type direction distance location
LOC110526245 LOC106587150 coding upstream 164173 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 391568 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 487896 58318920 ~ 58408967 (+)
LOC110526238 LOC106587144 coding upstream 633214 58260503 ~ 58263649 (+)
LOC110526235 LOC106586999 coding upstream 653286 58236260 ~ 58243577 (+)
tshz3b tshz3 coding downstream 438646 59343119 ~ 59376681 (+)
LOC118965037 NA coding downstream 939155 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 946689 59851162 ~ 59861646 (+)
LOC110526261 LOC106562006 coding downstream 1263032 60167505 ~ 60175549 (+)
LOC100653452 LOC106587300 coding downstream 1525728 60430201 ~ 60432307 (+)
G527452 NA non-coding upstream 113477 58780584 ~ 58783386 (+)
G527451 NA non-coding upstream 117263 58779369 ~ 58779600 (+)
G527447 NA non-coding upstream 119681 58776683 ~ 58777182 (+)
G527446 LOC105416325 non-coding upstream 121369 58775258 ~ 58775494 (+)
G527444 NA non-coding upstream 123233 58773352 ~ 58773630 (+)
G527589 NA non-coding downstream 78924 58983397 ~ 58984068 (+)
G527594 NA non-coding downstream 90901 58995374 ~ 58995705 (+)
G527599 NA non-coding downstream 103779 59008252 ~ 59009305 (+)
G527885 NA non-coding downstream 243461 59147934 ~ 59148141 (+)
G527963 NA non-coding downstream 298939 59203412 ~ 59203664 (+)
G527450 NA other upstream 117846 58778723 ~ 58779017 (+)
G526628 LOC106587143 other upstream 624027 58272079 ~ 58272836 (+)
G526547 NA other upstream 784044 58110906 ~ 58112819 (+)
G525972 NA other upstream 1078583 57817824 ~ 57818280 (+)
G528653 NA other downstream 867235 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3067263 61971487 ~ 61979527 (+)
G531406 NA other downstream 3245300 62149773 ~ 62152218 (+)
G532259 NA other downstream 3915947 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 4107785 63005672 ~ 63068991 (+)

Expression


Co-expression Network