G528321


Basic Information

Item Value
gene id G528321
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59528358 ~ 59530867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU598573
GTAGTTACAAAACGAAGCATCTGCCATGAGAATACAGCAAACAAAAGGTTTTCAGCTCACAAGACAGGTTCGTACGTGGAATGCTCATATACCGGTTCAGAGAGAGCCAGACAGTTAATATTAACCTCTCAGCTATACAACCACACaacggagagaaggggagagagggcgTCACTATGGGACTGACCGGGCCCTCTGATTGGTTAACTCAGACCCAGTCCCACAATCCACTTCTCAGCACCCTGTTTAATTCCCAACAATACCACTTTTTGTTTTATATTTCTCGTCCTTTTTTCTCCTCCTTCATATTTTGGAATTGGGAATTCTAAAGTCAAGAAAAGCAaattaaaaacagttttttttttgtgtgtgtgtggagttgaATTTCAACCCGATGTGGAACTTGAGCATTGATCATCACTCTGCTTTAGAGTAACAACCAGCATGTAAATGATGACCACACAGGTGACTTGCATGCCTTGGGTTGGCACTATGATAACAGTTTTGTCAAAGCCATGTACTGTGGTCCTTCAAACtgaaaatgtactgtatatatatatgtgcacTGTACATACCGCATTAGAATTCTCAGGGTTCACAAGAGGACATAGAAACATTTCACAATGTcaagggacacacagacacacacacacacacaccttcattgTAGTTAGTGAGCTAGTTTTGTACTGTATAGATTTTGATTTATAATACTAATCACAGCGCAAAATACTTTTGGGAGAAAAAACAAATCCTTCTATGCATAATGTATTATGTATATAAGGGCATATGTTTGGAGCACATGAGTAGATTGTCaatctttttcttttttctttgaaatgtaagaaggcaaaaaaaaaagtacaGTACTTGGAAGAAAAGGAAAACGGATCGACCCTAAGGCCTACCGTCTAAAACAACTAGCTTCGTGGATGCAACAACGGATGACTGTATCTAAGGCTAGACAATATTTGTTTTTTccagttttttcttcttcttcttcttcttcttctttttttttaaagtaaatacaTCAAACCGTTTCAGTAGTCAGTAACACTTTGCAACATTGATCGGTGGCAGTATCTTACAAACATTTGCAACACTACAGTCCTCGAAGTCAATAAGAGAGATGAAAAGGGGAGAAAATACAATCCCGTTTTGTTTTTCATATCTTCTCTTCAAGCTCTATGTTTACCTACAGGACAAGGTCGTGTAAACTAGTCATCACTGTCACTTCAACACCTTCTGCTCTTCACAAacagcgtttttttttttttttgttttttgttgttgctactTCTCTCTTTTTACATTTAGTTCTGAGCATTTACAGGCTCTGTGATATAGAGTGAGAAGAGTCTTCCCTTCTGTCCTGTTCCTGTTACggggagggggtggggtgaggaTCCTCAGTCCTCTGTCCATCGTCACACTTTACTGTACAATGCTCGGGCTTTCTCTCCTCGTTGTCACATCTACTAACATCCCAATCATATCTGAAAACTACTGCTCTCTCTTAGTTAGCTAGCACAGGAAAAGATTGTCAGAGAATGTCATACTTCTGGTttagtttttagtttttcagtttttCTTCTCCCTGTTAGTTTGTTTTTGACACGCAGAGCATTGTGCCCTAAAACAGGGTAGAAAACAGCAACTAAAATGTGCGTGGCAATAAGTGTGCTTGGTCTCCATAGATGGTTGGTCTGGTCAAAAGGAGCTTGTTAAGCTACAGCTCCAGCTGGACAAGAGTGGGAATGGTACAGTCCAGGGACAATACCATTACTGTGATCCAGGGGTCACTGAATACCTGTCTTGTACTGGAtctgataggagagagagagagagagagtctgtcgtACAGGTGAAGCACAGGTCAGCACAACAGTTCAGTCTGAATATTATCTgctttttttttgtcaacaatgatGGACGCCATCTTGGATCAAGGAATGTGTCATAGTAGGGGTGTTTTAGGGACTGTCATTTAGCAGGTAGTTTCAGCAAAAACATCAAAAGGAGAGACATGAAGAAGacagaagatggagggaggagtcaTCCATGAGAGGACAGGAAACAGAATGGTTAaagtcgctgtctgtctgtcactttgCTGAGCGTCACATCCAGTGGCCTCTACAAGTCATTTCAgcaggtctgtctctgtctcctctccatcctcacaCAGGGCAGAAACACTCCTTCATAGTTCCTTTTGAATGACTTCTCTTGTTTGATTGTAGCATGTTTTAAATCAACGTCGTTGATATAGTGTGTTccttcatcatcaccatcatcatcatgttcCTGCCTTGCTCCAGCCGGGTGCTCGGGCGGGAGTTAGTCTCTGTTAAGAGAGGCTGCGTCGTGCGTCTCAGTGTCAGCTAGGTTAGGCAGCGCGAGGTTAGGGTCGAGGGTCAGCGCGGGGCCCAGGGCTCCAtggccttcctcctctcctacccACAGAT

Function

NR:

description
zinc finger protein 536-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU598573 True 2471 lncRNA 0.42 2 59528358 59530867

Neighbor

gene id symbol gene type direction distance location
tshz3b tshz3 coding upstream 151677 59343119 ~ 59376681 (+)
LOC110526935 LOC106562040 coding upstream 527820 58814483 ~ 59000538 (+)
LOC110526245 LOC106587150 coding upstream 795668 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 1023063 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 1119391 58318920 ~ 58408967 (+)
LOC118965037 NA coding downstream 312761 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 320295 59851162 ~ 59861646 (+)
LOC110526261 LOC106562006 coding downstream 636638 60167505 ~ 60175549 (+)
LOC100653452 LOC106587300 coding downstream 899334 60430201 ~ 60432307 (+)
LOC110526265 NA coding downstream 917739 60448606 ~ 60452270 (+)
G528274 NA non-coding upstream 67067 59461078 ~ 59461291 (+)
G528265 NA non-coding upstream 71385 59456477 ~ 59456973 (+)
G528215 NA non-coding upstream 116693 59411461 ~ 59411665 (+)
G527992 NA non-coding upstream 286814 59238313 ~ 59241544 (+)
G527963 NA non-coding upstream 324694 59203412 ~ 59203664 (+)
G528337 NA non-coding downstream 20137 59551004 ~ 59553757 (+)
G528644 NA non-coding downstream 236295 59767162 ~ 59767517 (+)
G528663 NA non-coding downstream 247388 59778255 ~ 59778497 (+)
G528665 NA non-coding downstream 248362 59779229 ~ 59779452 (+)
G528673 NA non-coding downstream 254482 59785349 ~ 59785558 (+)
G527450 NA other upstream 749341 58778723 ~ 58779017 (+)
G526628 LOC106587143 other upstream 1255522 58272079 ~ 58272836 (+)
G526547 NA other upstream 1415539 58110906 ~ 58112819 (+)
G525972 NA other upstream 1710078 57817824 ~ 57818280 (+)
G528653 NA other downstream 240841 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 2440869 61971487 ~ 61979527 (+)
G531406 NA other downstream 2618906 62149773 ~ 62152218 (+)
G532259 NA other downstream 3289553 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 3481391 63005672 ~ 63068991 (+)

Expression


Co-expression Network