G528728 (ccne1)


Basic Information

Item Value
gene id G528728
gene name ccne1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59842580 ~ 59844196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU598990
ACTGCATCTTGCCCATGTTGTCCCAGGTACCAGAAGTGACTCACCATAGCACAGGAAGAGGGGAAGACCTGGTGGGTGTGACAAATATGTTTTTGAAGGTGTACCGAGCGGAAAAGCCAGTGGTATTCAAGGCAACTGGTTGAGCGACTTCATTGTCAGGCGCGGGGATCCGCCTGCACGGGCTTGTGAAAACCGACTCAGGATTCCAGCACACCGGAGTTCCACACTGTTTCTTTTTGATCATCTCTGCCACTTCATCTGGGTCTTGCAAATAAATGGCAACGTCTGCTTTTCTTTTCCTGGATCTCACTGTAGTTTCCTTGGGCATCTCATGATCAATAGACCTGGATTCCACATTTGTCCCCTTTCTTAGCATTATAGCCCACGTGTATCACTCCAATAGAGAACCTAAAAGTATTCCCCTGCGAAGAAGTCCACACTTGGCTGAAAGGATCAGACAAAATATAGCTACGgttactagctagctatttcaatTATTGTTCGATTCGTGGCCTCTGTCATCAAAAGGGAGCTGTGAACTTTGCTAGCTACTTGTTCTTCGCTAGTGCGGTGAGTTTTGCG

Function

symbol description
ccne1 Enables kinase activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within cell division and regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in anterior axial hypoblast; intestine; nervous system; notochord; and polster. Human ortholog(s) of this gene implicated in breast adenocarcinoma. Orthologous to human CCNE1 (cyclin E1).

NR:

description
G1/S-specific cyclin-E1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU598990 True 582 lncRNA 0.47 5 59842580 59844196

Neighbor

gene id symbol gene type direction distance location
tshz3b tshz3 coding upstream 465899 59343119 ~ 59376681 (+)
LOC110526935 LOC106562040 coding upstream 842042 58814483 ~ 59000538 (+)
LOC110526245 LOC106587150 coding upstream 1109890 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 1337285 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 1433613 58318920 ~ 58408967 (+)
LOC110526256 LOC106562011 coding downstream 6966 59851162 ~ 59861646 (+)
LOC110526261 LOC106562006 coding downstream 323309 60167505 ~ 60175549 (+)
LOC100653452 LOC106587300 coding downstream 586005 60430201 ~ 60432307 (+)
LOC110526265 NA coding downstream 604410 60448606 ~ 60452270 (+)
LOC110526268 LOC106587295 coding downstream 663763 60507959 ~ 60525243 (+)
G528705 NA non-coding upstream 35842 59805938 ~ 59806738 (+)
G528673 NA non-coding upstream 57022 59785349 ~ 59785558 (+)
G528665 NA non-coding upstream 63128 59779229 ~ 59779452 (+)
G528663 NA non-coding upstream 64083 59778255 ~ 59778497 (+)
G528644 NA non-coding upstream 75063 59767162 ~ 59767517 (+)
G528802 NA non-coding downstream 52597 59896793 ~ 59900613 (+)
G528986 NA non-coding downstream 189876 60034072 ~ 60034297 (+)
G529052 NA non-coding downstream 235973 60080169 ~ 60080372 (+)
G529500 NA non-coding downstream 561441 60405637 ~ 60405856 (+)
G529502 NA non-coding downstream 562026 60406222 ~ 60406430 (+)
G528653 NA other upstream 70496 59771708 ~ 59772084 (+)
G527450 NA other upstream 1063563 58778723 ~ 58779017 (+)
G526628 LOC106587143 other upstream 1569744 58272079 ~ 58272836 (+)
G526547 NA other upstream 1729761 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 2127540 61971487 ~ 61979527 (+)
G531406 NA other downstream 2305577 62149773 ~ 62152218 (+)
G532259 NA other downstream 2976224 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 3168062 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 3188735 63032931 ~ 63198734 (+)

Expression


Co-expression Network