G529528 (LOC104954799)


Basic Information

Item Value
gene id G529528
gene name LOC104954799
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60432829 ~ 60435307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU599822
GGTTAATATCAATTTGTTTATTTGTGCAAACGACATGATATTTATTCTGTTTTTGCTGATTTACAAGTAGCTCATACATACAATAGATAGGGTTCAGAATCCAGAAGACAACGAGATGAATAGAACCCAACCCCAGCAGAGATCTTTTAATCAATGTGGACATCTAAGAAATTAAGGTTAGCTGCCACTTTAGTAGCGCCAGTGGCAAAGGGGTATCATACACATCAGTTCCTCCTACCACTCATTGAGATATCCAGAGCAGGTCTATGTAAAAGCATGCACCAACACACACCGCTTAACTCTCTACAAATGGCTGTCAACCACAGAAGTAAGGCCGCAACCAGAAAAAAAAAGCTCAAGCTAAATGAGTGAAGCagttgaggagagagaaagaggagggcaAAGGAAAATCTACAGCCGACTGCCCAGGTGTTAGTCCATGGAGGAGAAGAGGTTGTTGGGTCACAGCGTTAGGTCAATGGGATAACTCTCCCCCAGTACGACCTAGTAATGATGAGACATAAAAGCAGGCAATTTCTTTCTTTTGCATGACCATGAAATCATGATGACGTACAGACAGAGGAGATGAGTAGGGTACAAACTTTAAACATGAGCTTCCACTGGCTATATCTTCGCCTTCTGAGGGTGACGACGGACAACAGAAATTGTCAAATATGATGGAATGACAACACACAGGAAGTGCAAGACAAACTGCAGCCTGTACACCATGTATTCTCAAAAGCAACACCTTTAAATGCAACACCTTATGCTAAAAATGGTAACATGAAATAAAGGGGGATGATAGAAGGAAATAgagtgagaggagaaaagatagaaagagaaagaaatagagagatggaAGGCAGGTGTTGTTGGTGGGGTTGGCATTTTTCCCAATGGATGGAATACCCTGGTGtgagtgtacatgtgtgtgtaaatatatatatagatatttatAAGTGTAGCGAGTCCTACAGCACCAGGCCCTCATAAGCAGGCCCCTCAGCCTCCGGCGACTCTCTCTGCAGACGCAGGTGCTCCAGTGTGTTGTGGAAGTGTTTGTTGATCTGCTCCGTCTCCTCGCTGGCCTCCAGGTTTGGCAGGTCCTCTCGGATCTTCTGGATCAGCTGGTTCAGAACCTGGACCGTCACGCATCATTCTCTCTTTCGTAGAAACAGACATATCTGTTCAGGATCTCAATGAAGAGCTGCACTTGCAATGACGGGTCCATGCACTGATTGGCGATTTTCAGGGCCTTCTTTAAGCACTCCATCACCCTCTTCCCGTCAAGActcctctccattCTTTTCAGTGTTGCGTCCGGACCAGAAGAGGTGTGCACAGATGCTGACGGCCCGACACTGGTCTGGCTTCTTGAGCAGTTTGGAGGCAGCGAGCGCACACTGTGTCCTCAGGGGCTCATGGTTCTCCTCGCTGAAGCATTTTGTTCTCTCAAACGTGCCGATGATCAGCGTGATAGCTGCTAGTTGAGCCTTGGAGTCGCTGATCTCATCCTCATACA

Function

NR:

description
Vacuolar protein sorting-associated protein 35, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU599822 True 1522 lncRNA 0.46 3 60432829 60435307

Neighbor

gene id symbol gene type direction distance location
LOC100653452 LOC106587300 coding upstream 522 60430201 ~ 60432307 (+)
LOC110526261 LOC106562006 coding upstream 257280 60167505 ~ 60175549 (+)
LOC110526256 LOC106562011 coding upstream 571183 59851162 ~ 59861646 (+)
LOC118965037 NA coding upstream 585243 59843628 ~ 59847586 (+)
tshz3b tshz3 coding upstream 1056148 59343119 ~ 59376681 (+)
LOC110526265 NA coding downstream 13299 60448606 ~ 60452270 (+)
LOC110526268 LOC106587295 coding downstream 72652 60507959 ~ 60525243 (+)
LOC110526270 LOC106587291 coding downstream 236401 60671708 ~ 60752783 (+)
LOC110526274 LOC106561991 coding downstream 380276 60815583 ~ 60863460 (+)
LOC110526277 LOC106587287 coding downstream 1450526 61885833 ~ 61902001 (+)
G529525 NA non-coding upstream 7001 60425506 ~ 60425828 (+)
G529523 NA non-coding upstream 11763 60420802 ~ 60421066 (+)
G529506 NA non-coding upstream 24733 60407689 ~ 60408096 (+)
G529504 NA non-coding upstream 25794 60406722 ~ 60407035 (+)
G529502 NA non-coding upstream 26399 60406222 ~ 60406430 (+)
G529559 NA non-coding downstream 43384 60478691 ~ 60479017 (+)
G529561 NA non-coding downstream 46669 60481976 ~ 60482185 (+)
G529562 NA non-coding downstream 48955 60484262 ~ 60484462 (+)
G529570 NA non-coding downstream 56950 60492257 ~ 60492474 (+)
G529571 NA non-coding downstream 57466 60492773 ~ 60492977 (+)
G528653 NA other upstream 660745 59771708 ~ 59772084 (+)
G527450 NA other upstream 1653812 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 2060861 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 2159993 58272079 ~ 58272836 (+)
G526547 NA other upstream 2320010 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 1536429 61971487 ~ 61979527 (+)
G531406 NA other downstream 1714466 62149773 ~ 62152218 (+)
G532259 NA other downstream 2385113 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 2576951 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 2597624 63032931 ~ 63198734 (+)

Expression


Co-expression Network