G529574 (cssa11h16orf87)


Basic Information

Item Value
gene id G529574
gene name cssa11h16orf87
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60498147 ~ 60499184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU599874
ACCCCCTCCAATTCCATAAGCTTACTCTAAAGATAAGTTGGTTCCAACATTTCCTCTTGAGCAGACCAGGTGCCTGCTTCTCAATGTTCCCCAACATCTCCATTTTCCCAAGGCTTTGACCAATCGGGCAGGGAGTTCATGGGTCAGAGTTCATACCCTGTTAGACACACTGTGGTGGTCATCCATGGGTTTTTCCACAGTAACAATCTTAGGTTTCACATGTCAATCCCTCAAAgcaaccatctggtctgtctatAAGATCAGTCTTTGGCCCAGGATCTTCCGGTTGATCTCGGCCAATGCCACCGAAAACACAAATGCTTTCTCATCTGAGAGGTTGGCATAGATATCAACTTCTTTCTCAATTTTTTctttctcctcctcctgcttcttCAGCCCAACTGTCTTTGGCCTGCCCCGCCCTCTCCGGATCTGATCCGATTGGCTGTTGGAGCGGCATCGCCTTCTGTTCTCCATGTCATTGGTTGACGGAGAGTTGATCTTCTCTCTGCGAATTCTTTCAGTTCTCCTCCTCTTTGCATCCAATTTGTCTAAATAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU599874 True 559 lncRNA 0.47 2 60498147 60499184

Neighbor

gene id symbol gene type direction distance location
LOC110526265 NA coding upstream 45877 60448606 ~ 60452270 (+)
LOC100653452 LOC106587300 coding upstream 65840 60430201 ~ 60432307 (+)
LOC110526261 LOC106562006 coding upstream 322598 60167505 ~ 60175549 (+)
LOC110526256 LOC106562011 coding upstream 636501 59851162 ~ 59861646 (+)
LOC118965037 NA coding upstream 650561 59843628 ~ 59847586 (+)
LOC110526268 LOC106587295 coding downstream 8775 60507959 ~ 60525243 (+)
LOC110526270 LOC106587291 coding downstream 172524 60671708 ~ 60752783 (+)
LOC110526274 LOC106561991 coding downstream 316399 60815583 ~ 60863460 (+)
LOC110526277 LOC106587287 coding downstream 1386649 61885833 ~ 61902001 (+)
LOC110526278 LOC106587286 coding downstream 1416535 61903571 ~ 61960273 (+)
G529575 NA non-coding upstream 154 60497604 ~ 60497993 (+)
G529573 NA non-coding upstream 4006 60493942 ~ 60494141 (+)
G529571 NA non-coding upstream 5170 60492773 ~ 60492977 (+)
G529570 NA non-coding upstream 5673 60492257 ~ 60492474 (+)
G529562 NA non-coding upstream 13685 60484262 ~ 60484462 (+)
G529576 NA non-coding downstream 2705 60501889 ~ 60504820 (+)
G529592 NA non-coding downstream 35709 60534893 ~ 60535096 (+)
G529537 NA non-coding downstream 41555 60540739 ~ 60540954 (+)
G529539 neto2 non-coding downstream 44545 60543729 ~ 60560821 (+)
G529675 NA non-coding downstream 217852 60717036 ~ 60718709 (+)
G528653 NA other upstream 726063 59771708 ~ 59772084 (+)
G527450 NA other upstream 1719130 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 2126179 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 2225311 58272079 ~ 58272836 (+)
G526547 NA other upstream 2385328 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 1472552 61971487 ~ 61979527 (+)
G531406 NA other downstream 1650589 62149773 ~ 62152218 (+)
G532259 NA other downstream 2321236 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 2513074 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 2533747 63032931 ~ 63198734 (+)

Expression


Co-expression Network