G530966



Basic Information


Item Value
gene id G530966
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61503976 ~ 61504246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU601320
gtacaatatttgcattattattaaaaaaatcttcaagctctgtcaagttggttgttgatcattgctagacagccattttaaagtcttgccatagattttccagACAATTTAAGTAAAAACGGTAACTAGGCACTCAGAAaaattcaatgtcgtcttggtatgcaactccagtgtatatttggccttggttttaggttattgtcctaatGAAAGGTaaatttgtcttccagtgtctgttggaaagaagactgaaccaggttttcctctagga

Function


NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU601320 True 271 lncRNA 0.35 1 61503976 61504246

Neighbor


gene id symbol gene type direction distance location
LOC110526274 LOC106561991 coding upstream 640516 60815583 ~ 60863460 (+)
LOC110526270 LOC106587291 coding upstream 751193 60671708 ~ 60752783 (+)
LOC110526268 LOC106587295 coding upstream 978733 60507959 ~ 60525243 (+)
LOC110526265 NA coding upstream 1051706 60448606 ~ 60452270 (+)
LOC100653452 LOC106587300 coding upstream 1071669 60430201 ~ 60432307 (+)
LOC110526277 LOC106587287 coding downstream 381587 61885833 ~ 61902001 (+)
LOC110526278 LOC106587286 coding downstream 411473 61903571 ~ 61960273 (+)
LOC110526279 LOC106587285 coding downstream 457140 61961386 ~ 61964415 (+)
LOC110526282 LOC106561985 coding downstream 467241 61971487 ~ 61979527 (+)
LOC110526284 LOC106587278 coding downstream 521842 62026088 ~ 62032556 (+)
G530951 NA non-coding upstream 7824 61495723 ~ 61496152 (+)
G530942 NA non-coding upstream 17600 61486171 ~ 61486376 (+)
G530932 NA non-coding upstream 24162 61479405 ~ 61479814 (+)
G530920 NA non-coding upstream 26090 61473163 ~ 61477886 (+)
G530875 NA non-coding upstream 66340 61437413 ~ 61437636 (+)
G530970 LOC106587288 non-coding downstream 7200 61511446 ~ 61518459 (+)
G531018 NA non-coding downstream 81982 61586228 ~ 61586728 (+)
G531155 NA non-coding downstream 259438 61763684 ~ 61763939 (+)
G531156 NA non-coding downstream 259723 61763969 ~ 61764333 (+)
G531180 NA non-coding downstream 288561 61792807 ~ 61793248 (+)
G528653 NA other upstream 1731892 59771708 ~ 59772084 (+)
G527450 NA other upstream 2724959 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3132008 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 3231140 58272079 ~ 58272836 (+)
G526547 NA other upstream 3391157 58110906 ~ 58112819 (+)
G531406 NA other downstream 645527 62149773 ~ 62152218 (+)
G532259 NA other downstream 1316174 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 1508012 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 1528685 63032931 ~ 63198734 (+)

Expression



Co-expression Network