XLOC_024427


Basic Information

Item Value
gene id XLOC_024427
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 4194792 ~ 4195343 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049324
CCGCTCAATAAACGCCCAGGAGAGCGACAGGCCAGCCCGCAGAAGCATTTCGCCTTCGTTTGCTGGGAGATTGGAGCGACAACGCCCTGTCAGTGAAGAGCGGAGAGTAATGTTAATGCGGTGACGTGTTATGGCTGTACTCACTGCGGAGGCCGTGGTGATTATGCAAATGACTTCAGCTGTGACACGGACAAGGCCACACAGACTGTGCAAAAGTTAAGTATGTCTGGGATCCGATAGtaatatataagtacacccttaAGACAGTAAATATGTCACAAAGACATATGTGCATCATGGGACACAGAacatgttgatgatgatgatgtgaaaCAAAGGGCGAGAAGTGACAAGGTTGCACATGCCAGTATAGTGCTTCTTTTGAGCAACACAACAGCGCCACCCTGTGTTCACAAGCGTTCACAGGCACCCAGAGCTGTGTGAGTGATCTATTTAAAAGTATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049324 True 464 lncRNA 0.48 2 4194792 4195343

Neighbor

gene id symbol gene type direction distance location
XLOC_024426 ppp1r32 coding downstream 2155 4180301 ~ 4192637 (-)
XLOC_024425 NA coding downstream 23035 4168932 ~ 4171757 (-)
XLOC_024424 fads2 coding downstream 46073 4133488 ~ 4148719 (-)
XLOC_024423 myrf coding downstream 215209 3897907 ~ 3979583 (-)
XLOC_024422 tmem258 coding downstream 302106 3887270 ~ 3892686 (-)
XLOC_024428 syt7a coding upstream 35895 4231238 ~ 4313699 (-)
XLOC_024429 FO907094.1 coding upstream 130273 4325616 ~ 4325731 (-)
XLOC_024430 slc25a22a coding upstream 264696 4460039 ~ 4482506 (-)
XLOC_024431 pidd1 coding upstream 311945 4507288 ~ 4530085 (-)
XLOC_024432 NA coding upstream 374885 4570228 ~ 4578464 (-)
XLOC_024421 NA non-coding downstream 310362 3880722 ~ 3884430 (-)
XLOC_024415 NA non-coding downstream 446843 3746164 ~ 3747949 (-)
XLOC_024410 NA non-coding downstream 663624 3530467 ~ 3531168 (-)
XLOC_024407 NA non-coding downstream 801087 3377823 ~ 3393705 (-)
XLOC_024434 cyp19a1b non-coding upstream 695424 4890767 ~ 4904432 (-)
XLOC_024435 NA non-coding upstream 735022 4930365 ~ 4931600 (-)
XLOC_024437 NA non-coding upstream 1101089 5296432 ~ 5300492 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000127_02123640_02127797 NA coding CI01000127 null 2123477 ~ 2127797 (-)