G531874


Basic Information

Item Value
gene id G531874
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61903572 ~ 61960258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU602283
TTTATTTACTTTCCCCAATATAAGAAATGAATAAAAGCTCTAATACAAAACATGGATTTACGTCGATGACTGTGATTATAGGAAACAAGAATCTTTGTCACACAGGACAGTTGTGCACAACAGTGGGACTTATAGGGAAACTATACATTGGAAGTGTACATGTACAGTATTAcacattatttcacatttatGTTGAACATGTACTTATTGTGCTACCAAAAGGAAGTAAACAACAAAGACAAAACAGCATGTAAGACCAGAGTGAACCGCATTGCAGTTTTACCTCAACAGGTATTGGACTAGGTCTTCCAACACAGTTACAGAGCATTTCTACTGACTTGTAAAGGCAGGTAAAGTTGCATTTCTAGatacctctgtgtgtgtcacaATGCACACAATCTAATACGTTGTGCTATTCACTGCATTGCACTTTTAGATTTCAGTTGGTGAAACACAAGCCCATCATTATTATTGTATAGCATCGCTAGATTTGCAGTAGCTACATAATAATAAGCACAAATGCTCATTGTCAAGTTATTAACACATCATTTTTAGCCCAAACATTGCTTTATTTATAGGGCTTGACATGACAATTCTGACCACAAATAGACTATGTATTAACAAGTGCCGAGAACAGCATTTGGTTTTAAAAGCCATTTAACAAACTCTCTCAAAGTCAAATCCATTAGATGATGATTGGCGCAAGAATGTAACGCAAGAAAAATAACCTGTTGATCTTTAATCTTTAGACATTTTTGTCTAGTGCGAAGCATCTGTGCTGTAGTACATCTACATTCTGGTGAATCTCACAACAACTATTTAATAGTAGTCTTTCCACAGTTATACACATTATTGTTAAAGCTATTCTAAATAAATACTCATCTCTTTATAACTTTTATCCACAATGCCAGCAATGCAATCATGCGACTAAGTCATATATAAAATATTCTTTAAGGGTTCATCAGTGAGGATTTCACTTCACAATAAGGGATTTGGTAAGATAAATGAGGGAGACTATGAGAAAGAGTTGGCTGGAACAGAGATACCAACTGACTCCACAAATACGGTTGTATACACAAAATATGGACATTATGCCACATTTTCCGCTGTGTGCTTTTTCTGGGGTTTCAATGATGAACATAGACGTATCTGAATAACAACAAAGTACCACAAGCCTTGAAAAATAGCAAGctatttggaaaaggaaagctcTTGATTTGTTAATCAGTTGCAAGTTATTGTGGCTACAATGTTAAGCAGTCTAACAGTCTTAGACGTAGTGCTTGGCAGGCACAGCCATTTTTATACCATTTATACATGGATGACAGACATGTAAAAAACATTTCAACTGAAGAGAGTTTATCTGTACAATGAATACTCACAACCAAAAACAACATATTGAATAATAATTTGGAAGCCTTAAAAATATTCCAGCATATTGAAAAATACAATGTGTTTAGGCTGGATAATATTTTGAAAAAACAAATGGATTATTTATTATAATATCGAAGATGTCAGTACTAAAGTATAGTAAATCCCTCATCACAGTAAACTGTGTGCAAATATAATTTTTCCTTCCCACCAATTGTCAAATACCATTGTATCTCTGCTACAAGCTATATTGTACTTTGATGTTAGCTGGCGAATGGGTCACGTTCATAGTAATTTCACTTGTGAACACCCAAAAAAGCTCTCCACAAAaagaggaggagtgagagagagaagaggaatgtGTGGCAGTGCACGTTCGGAGACTGAAACAGAGCAGTTGGGATCTAAATGGACCTCAGCCCCCAGAGGGGAAACCTAATTATGGAGAATAGACAGTATTTCCAGCTCATATAAACGTGTTTATATCCAGAAACCATATAAAACCGTATACCAcaaaaataatttatttaaaaaataccaCTCttggaaaaaagggttccaaaaggtttctttggctgtccccataggcaAATCCTtcttggttctaggtagaacccttttgggttccaggtagaaccctctgtggaaaaggtCCGACATGgaaccaaaagtgttctacctggaaccaaaaagggttattcaaatggttctcctatggggacagccaaaaaaaaccgtttaggttctagatagcacctttttttctaagagtgtataacACTGGGGTATATTTATCAGTTGAAATTACTGGACATTTTACAGACTGTGGGAGTCCTAAAGTCAGCTAAAtataaatcaaatattattttcaTATAGAAAATATTAATAAAACCATATGGATATGTGATGGAATGTGAAATTAGTCATTCTTTCTATTGTGTTTTTTATCAAGAGCAATTCCATTACAACATAACAAAATCCAACAGTACATACAGAATATCTATGTGAAACCACTTCAGGTTACCTCTAGTGTTTTTTGTGCTAAAAACAGACTTTGATAATGCTTCCTAAATGCTTGAATGCCTCCTAACCTGAGACCAATTTACAGTATGAAGTGAATTCCCTCTGGACAGAAAGACAATTACTCCCCCAGCCCCAGTTTACCAGTAGTAGCCCTGTGATTTCATGGCAGTGCCCCAGTAGTAAAGGGAGATAGAGTGAGGAGTGGTGCGGGTAACATCTTAGAGTTTGGGGACACAGCTTATccaagaggaagaaggagaggaaggcGCAGACTGAGTTTAGGTTCAACCCAAACTTTCAGCTTCGGTCCAGAAAGTAATTCTCTTTTGATACTGCCTGTCATGCACAAAGGGACACTGGAAGAAGCTGAAGAGAGTTAggctgggaggtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU602285
TTTATTTACTTTCCCCAATATAAGAAATGAATAAAAGCTCTAATACAAAACATGGATTTACGTCGATGACTGTGATTATAGGAAACAAGAATCTTTGTCACACAGGACAGTTGTGCACAACAGTGGGACTTATAGGGAAACTATACATTGGAAGTGTACATGTACAGTATTAcacattatttcacatttatGTTGAACATGTACTTATTGTGCTACCAAAAGGAAGTAAACAACAAAGACAAAACAGCATGTAAGACCAGAGTGAACCGCATTGCAGTTTTACCTCAACAGGTATTGGACTAGGTCTTCCAACACAGTTACAGAGCATTTCTACTGACTTGTAAAGGCAGGTAAAGTTGCATTTCTAGatacctctgtgtgtgtcacaATGCACACAATCTAATACGTTGTGCTATTCACTGCATTGCACTTTTAGATTTCAGTTGGTGAAACACAAGCCCATCATTATTATTGTATAGCATCGCTAGATTTGCAGTAGCTACATAATAATAAGCACAAATGCTCATTGTCAAGTTATTAACACATCATTTTTAGCCCAAACATTGCTTTATTTATAGGGCTTGACATGACAATTCTGACCACAAATAGACTATGTATTAACAAGTGCCGAGAACAGCATTTGGTTTTAAAAGCCATTTAACAAACTCTCTCAAAGTCAAATCCATTAGATGATGATTGGCGCAAGAATGTAACGCAAGAAAAATAACCTGTTGATCTTTAATCTTTAGACATTTTTGTCTAGTGCGAAGCATCTGTGCTGTAGTACATCTACATTCTGGTGAATCTCACAACAACTATTTAATAGTAGTCTTTCCACAGTTATACACATTATTGTTAAAGCTATTCTAAATAAATACTCATCTCTTTATAACTTTTATCCACAATGCCAGCAATGCAATCATGCGACTAAGTCATATATAAAATATTCTTTAAGGGTTCATCAGTGAGGATTTCACTTCACAATAAGGGATTTGGTAAGATAAATGAGGGAGACTATGAGAAAGAGTTGGCTGGAACAGAGATACCAACTGACTCCACAAATACGGTTGTATACACAAAATATGGACATTATGCCACATTTTCCGCTGTGTGCTTTTTCTGGGGTTTCAATGATGAACATAGACGTATCTGAATAACAACAAAGTACCACAAGCCTTGAAAAATAGCAAGctatttggaaaaggaaagctcTTGATTTGTTAATCAGTTGCAAGTTATTGTGGCTACAATGTTAAGCAGTCTAACAGTCTTAGACGTAGTGCTTGGCAGGCACAGCCATTTTTATACCATTTATACATGGATGACAGACATGTAAAAAACATTTCAACTGAAGAGAGTTTATCTGTACAATGAATACTCACAACCAAAAACAACATATTGAATAATAATTTGGAAGCCTTAAAAATATTCCAGCATATTGAAAAATACAATGTGTTTAGGCTGGATAATATTTTGAAAAAACAAATGGATTATTTATTATAATATCGAAGATGTCAGTACTAAAGTATAGTAAATCCCTCATCACAGTAAACTGTGTGCAAATATAATTTTTCCTTCCCACCAATTGTCAAATACCATTGTATCTCTGCTACAAGCTATATTGTACTTTGATGTTAGCTGGCGAATGGGTCACGTTCATAGTAATTTCACTTGTGAACACCCAAAAAAGCTCTCCACAAAaagaggaggagtgagagagagaagaggaatgtGTGGCAGTGCACGTTCGGAGACTGAAACAGAGCAGTTGGGATCTAAATGGACCTCAGCCCCCAGAGGGGAAACCTAATTATGGAGAATAGACAGTATTTCCAGCTCATATAAACGTGTTTATATCCAGAAACCATATAAAACCGTATACCAcaaaaataatttatttaaaaaataccaCTCttggaaaaaagggttccaaaaggtttctttggctgtccccataggcaAATCCTtcttggttctaggtagaacccttttgggttccaggtagaaccctctgtggaaaaggtCCGACATGgaaccaaaagtgttctacctggaaccaaaaagggttattcaaatggttctcctatggggacagccaaaaaaaaccgtttaggttctagatagcacctttttttctaagagtgtataacACTGGGGTATATTTATCAGTTGAAATTACTGGACATTTTACAGACTGTGGGAGTCCTAAAGTCAGCTAAAtataaatcaaatattattttcaTATAGAAAATATTAATAAAACCATATGGATATGTGATGGAATGTGAAATTAGTCATTCTTTCTATTGTGTTTTTTATCAAGAGCAATTCCATTACAACATAACAAAATCCAACAGTACATACAGAATATCTATGTGAAACCACTTCAGGTTACCTCTAGTGTTTTTTGTGCTAAAAACAGACTTTGATAATGCTTCCTAAATGCTTGAATGCCTCCTAACCTGAGACCAATTTACAGTATGAAGTGAATTCCCTCTGGACAGAAAGACAATTACTCCCCCAGCCCCAGTTTACCAGTAGTAGCCCTGTGATTTCATGGCAGTGCCCCAGTAGTAAAGGGAGATAGAGTGAGGAGTGGTGCGGGTAACATCTTAGAGTTTGGGGACACAGCTTATccaagaggaagaaggagaggaaggcGCAGACTGAGTTTAGGTTCAACCCAAACTTTCAGCTTCGGTCCAGAAAGTAATTCTCTTTTGATACTGCCTGTCATGCACAAAGGGACACTGGAAGAAGCTGAAGAGAGTTAggctgggaggtgtgtgtgtgtgtgtgtgtGTATACAATG

Function

NR:

description
guanine nucleotide exchange factor VAV3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU602283 False 2844 lncRNA 0.37 2 61903572 61960258
TU602285 True 2812 lncRNA 0.37 2 61951958 61960258

Neighbor

gene id symbol gene type direction distance location
LOC110526276 LOC106587288 coding downstream 330628 61505378 ~ 61572944 (-)
LOC110526275 LOC106587289 coding downstream 604112 61225735 ~ 61299460 (-)
LOC110526271 LOC106587292 coding downstream 1231910 60559137 ~ 60671662 (-)
LOC110526272 LOC106587293 coding downstream 1344675 60543727 ~ 60558897 (-)
LOC110526273 LOC100286703 coding downstream 1361090 60537686 ~ 60542482 (-)
LOC110526280 LOC106587284 coding upstream 5999 61966257 ~ 61969969 (-)
LOC110526281 cmtm4 coding upstream 19223 61979481 ~ 61997681 (-)
LOC110526283 LOC106587279 coding upstream 38239 61998497 ~ 62013417 (-)
LOC110526285 ula1 coding upstream 103693 62063951 ~ 62070822 (-)
LOC110526287 LOC106587276 coding upstream 150970 62111228 ~ 62149523 (-)
G531826 NA non-coding downstream 75924 61827434 ~ 61827648 (-)
G531824 NA non-coding downstream 78057 61825298 ~ 61825515 (-)
G531752 NA non-coding downstream 173014 61730068 ~ 61730558 (-)
G530943 NA non-coding downstream 417340 61485959 ~ 61486232 (-)
G530941 NA non-coding downstream 418997 61484313 ~ 61484575 (-)
G531952 NA non-coding upstream 83882 62044140 ~ 62044476 (-)
G532026 LOC106587268 non-coding upstream 324045 62284303 ~ 62337421 (-)
LOC110526290 LOC106587270 non-coding upstream 359534 62319792 ~ 62322857 (-)
G532047 NA non-coding upstream 384024 62344282 ~ 62346751 (-)
znf536 LOC106562015 other downstream 2206609 59507092 ~ 59698393 (-)
G527449 NA other downstream 3125105 58777782 ~ 58778467 (-)
G526903 NA other downstream 3644596 58258552 ~ 58258976 (-)
G526784 dhcr7 other downstream 3748656 58151850 ~ 58154916 (-)
G526752 NA other downstream 3921781 57981467 ~ 57981791 (-)
LOC110526302 LOC106562167 other upstream 553865 62500665 ~ 62566214 (-)
G532766 NA other upstream 862647 62822905 ~ 62855007 (-)
G532763 NA other upstream 891438 62851696 ~ 62852817 (-)
LOC110526310 LOC106587159 other upstream 1025271 62985486 ~ 62991995 (-)
igdcc3 LOC106562146 other upstream 1863641 63823887 ~ 63944930 (-)

Expression


Co-expression Network