G532026 (LOC106587268)


Basic Information

Item Value
gene id G532026
gene name LOC106587268
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62284303 ~ 62337421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU602477
TCGCCTCATAAAACATAGGATCTCAAGTAAAAAAAACACAAGTATAGAGTCAAATTAAAACGTTTTAgcgtcactgtccaaataaatacgaaGGGGAGTGAAAATTGCTTCCTCCAGGATACCATTCCAGAAAAGCAGCTAAAAAGCTACATTGACAGGCTGCTTTTGCTGTACCTCCAGTGTAGCAGCTCAAATATATCTACAGGAGAGGATTTGAACATGCTTTTACTGTCATAATGGTGCCCTCCAGCTTGCTAGGGCCTGTGCACACATTGAAAAGGCCTTGAGGGTCCCCGTCAACTATCTTGTAGGTGGTGGCCCAGGCAGAGGAGTGAGGCTCATCTCCATCAGTCACTGGCATTTTCACCACCAAGGCATCCACTTTATTCTCTGGGACTGACACGGTGTACGAAGGCGTCACAAACTGTGGCGCGTTGTCATTGCTGTCCGTTACTGTAATGATGGCTTTGCCAAAGCTGGTAAGGCCATTTCCCTCCGTATCGGCAGCTTGGATTGCCAAAGTATATTTGGTAAATTTCTCTCTGTCCAACCCAGGTGCGTTAACCCGAATCCCTCCAGTCACAGGGTTGATGACAAACATGTTGGGGCTTGGTAGTGGAGGCTCCTGACTGAGAATGGTGTATCTGACATCAGAATTGGCAGAGCCCTCCTCATCAGTATCAGTGGCCGTTACCTGCATGACCTCATCACCTGGGTTTTGATGCCTCATGAACTGTTCCCGTAAATGGATCTTGTGTAAATACAGGTTTGTTGTCATTCATATCGATGACTTTCACAATGATCTCCATGGGATCCTCAGCTATACCTGCACCCACTGCAACAGCATGGGCTAGGAGAATGTATTGGTCTTTTTTCTCCCTGTCCAAAGGCTGGGTCACATAGAGTATTCCAGAGTTTTTGTCCACAGTGAAGAGTCCCACAGGAGGTAGGTCTGCCCCAGtgccagtgatgctgtactgGATCTTCACCTCTTTATCATTGCTGGACTTGATCTGCACCATATTCTTGGGGAACGGGCCTCGGGCATTCTCTGGGAAGTTGATGGGAGGAATGACCCAGTCCCTCTTCCTTCTTTTCAGACCTCCTGAAGACTTAGGGAAGTTCAGAACAGGTAGAGACAGACTTGCTCCTGGCTTGGGCTGGGTGGTCATCTCATGGTGATTGTGGTGGTGGCCATGTCTGGCCTCATGCAGCACTCTGACTGGAACCGTGAACTTCTTGCCCTTGGAATGGGTAGAGACATAGAACTCCTTATGTCCATTATGCAGAGTCAGCCCCCTCTTCAGTTTCAGCGTCCCGTCGCCATCTACTTTGAAGCGTGAATCCTCGGAGTGAAAGAGAAAGCTGGTACGGATGGTGCAGTCATCAAAAACCACTTTTCCAAGACTCCGGCCACTTCGTAAGTGATTTCTTTCCACTTTGAAAATGTACATTTCTGAATTGAAACCTGGAAGACATTTTGACTCCTCCGACAACCCTGGTTTGAACGCCTGGAGAAATAATATTAATACACCCAGCTCCACAAACCAAAATGCCCCCATTTGTTTTCAATAATTTCTGGACAGTCGTTCCACCAAGAGGTAAAAAGTAATCAGTTTACGAGTAGAGGGGAAACGTCTCTCTCGTTCAAATCTATTCTTTCTGGGTTGTCGCTTAAATAAGAAAAATGAGCTTCAGGAGGTAGTGATGTATGCAGGCAGGAGACCTCGC
>TU602481
GTCCAACGCTGATATTAGAGTAACGGAAAAATGCTCCTTAACCTACAAGACACTTACCTGCACCATATTCTTGGGGAACGGGCCTCGGGCATTCTCTGGGAAGTTGATGGGAGGAATGACCCAGTCCCTCTTCCTTCTTTTCAGACCTCCTGAAGACTTGGGGAAGTTCAGAACAGGTAGAGACAGACTTGCTCCAGGCTGTGGAATTGAAACAAACCATGAAATATCAAGTCTAGGGTTTTACAAGCACCAAAATACATACATGGAGCATTTTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU602477 False 1731 lncRNA 0.47 9 62284303 62293642
TU602481 True 276 lncRNA 0.45 2 62294207 62337421

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa-77 NA coding downstream 13547 62270684 ~ 62270756 (-)
trnaf-gaa-76 NA coding downstream 15006 62269225 ~ 62269297 (-)
trnaf-gaa-75 NA coding downstream 17043 62267188 ~ 62267260 (-)
trnaf-gaa-74 NA coding downstream 18502 62265729 ~ 62265801 (-)
trnaf-gaa-73 NA coding downstream 19961 62264270 ~ 62264342 (-)
LOC110526296 LOC106587267 coding upstream 20023 62357307 ~ 62377726 (-)
LOC110526294 LOC106587265 coding upstream 49009 62386430 ~ 62458694 (-)
LOC110526938 NA coding upstream 127039 62464460 ~ 62467011 (-)
LOC110526298 galns coding upstream 129765 62467186 ~ 62490147 (-)
pabpn1l LOC106587263 coding upstream 154255 62491676 ~ 62494804 (-)
G531952 NA non-coding downstream 239827 62044140 ~ 62044476 (-)
LOC110526281 cmtm4 non-coding downstream 297293 61979481 ~ 61997681 (-)
G531874 NA non-coding downstream 324045 61903572 ~ 61960258 (-)
G531826 NA non-coding downstream 456655 61827434 ~ 61827648 (-)
G531824 NA non-coding downstream 458788 61825298 ~ 61825515 (-)
G532047 NA non-coding upstream 6861 62344282 ~ 62346751 (-)
G532133 NA non-coding upstream 199799 62537220 ~ 62537483 (-)
G532165 NA non-coding upstream 255986 62593407 ~ 62593637 (-)
G532168 NA non-coding upstream 261873 62599294 ~ 62599536 (-)
znf536 LOC106562015 other downstream 2587340 59507092 ~ 59698393 (-)
G527449 NA other downstream 3505836 58777782 ~ 58778467 (-)
G526903 NA other downstream 4025327 58258552 ~ 58258976 (-)
G526784 dhcr7 other downstream 4129387 58151850 ~ 58154916 (-)
G526752 NA other downstream 4302512 57981467 ~ 57981791 (-)
LOC110526302 LOC106562167 other upstream 176702 62500665 ~ 62566214 (-)
G532766 NA other upstream 485484 62822905 ~ 62855007 (-)
G532763 NA other upstream 514275 62851696 ~ 62852817 (-)
LOC110526310 LOC106587159 other upstream 648108 62985486 ~ 62991995 (-)
igdcc3 LOC106562146 other upstream 1486478 63823887 ~ 63944930 (-)

Expression


Co-expression Network