G531510


Basic Information

Item Value
gene id G531510
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62501787 ~ 62506601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU601902
caatAAAAATAGTATTTGCCACAAGTTGTGACAAATGAAAGAGTTATTGTGTTTCAGGGTTGATTCGCAGACAAGCAAAGCACACAGAGAGCATTAAAGGATAATGTGTATTGAAATGTCGTCAAAACCTATGGTAATGTTGTGGATAATATGGTGGGTGAGTTCACTCTGTATTTCCCTCTCAGTGCACTGCTACATCTTTAGAATTCTCTGCCATTATTCTGACTGAGATGTTTCATTAAAGCTCTGAAGGTTCAAGTAGTTTGTACAGAGAAACTGTGAAAAGAGAaaaacaagtacacacacacacacacacacacacacacacacacacacaccatgcgtttattccatctgtaagcAAGGCTTAGGAAGAAAACTCAAAGCAATCATTACGCATTCCGGAGATGTTTCTGTAGTCTTATCTGAGGCATTAGATATGTAGAAACAAGCGCTTTGATTGCTTGAATAAATAATCTACAAATCTCCACCTTCACAGATGCATTGgttgtttgtttttgtcttgtgCTTTGAGCATGTGTTTATTTCAGACACTTTGGTTAACAGGTATAGTTGGCCTCAAGCCTCCTTATTTCTGGTCTTTCTCGACACAATTTCAAAATCCACCGCGGTGCAGAAATACTTTGGTCTGTGCTTTTATTTGTTGTGGACTACAAATGTAATGGTTTAACGTTCAGCTTGGGGATGGAAGGAATTACTGTATATCAAACCCTGGACAGTGTTGTGTACGTAGAGAGTCCTAGAATCAAAATCATCTGAGTGTTCCTCATTTGATCACTATTTCTGACTGACAAGAGGTTGAGGTGCGAAAATATACACATTGCAAAGTAATCAGTATTAGACCTTTCGGGTTTGTTTCCTATTTGCTCTGATGTTTGTGTGAGTTTGCATGTCTGCTCGCAGCCCTGCTCCCAAAGCTCAGTGACCTCTCCCAGTCATGTGCTGCAAGGTCACAGGAGGTAGCTTGTGGTGGGTCAGGAGACAGGAGGGATGTTCAGGTGGGGGTTAAAGAGCAGAGGGCTGAAGAGGTTTAGAAACACAAACAGGCTGAAGTCGTTTCAATACACCGGTAATAACACACGACACACATATACACGCAGATGCAGGGTACCTCGCAGCTTATCACACTTGACCGATTTATATATTACTTTTTGATACGGACATATAGGAAAATAGATCATGTACATATGTGATAAATTAAACAACACTGTCAATGCTAATTGACGTCTAATCGTTTCTGCGTCAATATGTCACTCTGGGTTTTAAATGTGAAAGAGTCTGGCAGACCATACCTGTAACAGTAGAACATAAAACAACACAAAAGCTTGGTCCATTTTAGAGTTATGTGGCCAATTGGTTCGGGATTATTACATCATTCATTTTAACATGGCAGGTACAGTCCCTATTTAATGCTATGTTTGAAAGCCATTTGAGCCTGTAATTCTAACTTAACGATGTTTTAACTTATAGCTTGTGATGACATTACTGTATGAGATGGCATTCCTCCTTGTTAGCCTGTGATTGTGAAGACATCTGTTCCAACTCTCCCAGGTTCTGAGTCCTTTTTGCCTTGCTAGGATCCTAAAGCTACACGAGGACAAAATGACTGAGACTGCATCTTCACAAACTAATCTATGGACAGAGTAAGAAAAAATAACCAGTGGAAAGGATTGGGCAGTATCATGGTTAGGTTAAGCTTCAGACTTCCAGACCAGTGTGTTGGCTTTTTTTTTTGAGGGCAGCCCACAGGGTTTTCAGTGTGGCCCACTGCAGTGGCACTTCAGCCCAATGGATGGCAATGTTTCACACAGATACAGATAACTTTTTGGGCACAAGTTCTTGCGTTCTGAATCCAATATCCAGAGTAGGGGAGTAATTTAGCCTCATGCTAGGACGCTTTTAGAATCAATGTGTGATaagcctctctttctcctctttaaAACCATCATCTTGGGCCTGTCATGAGAGCTATAGCTGGCTCCTCTTGAAGGGAGTCAGTGGAGTACGCCGCCATCAATCATAGGGGGAGCTATAAGAACTGTGACTCCAGAAGAAAACCACTATCGCTGCCAACATCCCTCCTCACAACATCTTTTTGAGATTACACACTCAACAGATTTTGCTAATCTGGTAGAAAATAAGGATTTATGAGAAATGAAAATTCCTTTGATTAAAAAAATGAACTGGAAAGAAATCATATTCTGGACATTGTACATTACTTTCAAGGTTTCTGTTATTTGGCAAACACATTTTTGGACCTCTTTAAATACTATGTACATTCACATTAAGTtactgatgttattttaaatatatttatatgtatctATATTATATGACCCCCTATGGGTAGTTGCTGAGGTTCCACCCAGTAGCTGAATTCTCTTCATATTGCACCTCTGTCCTCTCACTGTCTTACAATGCGAGCAATATAAAATATTCTACAAGAGGATTTTCTTTTCATTGATAAAGATACAACAAATTGAACGATAAGTACAACATGGGGTTTCTCTCCTAGAGTCTTTGCTCCTGCTTCAATGTTTTGTCCAAACTTAAAAAGAAGAAAAGTCCCTCTTTCTGAAAACGCACAAGGGCAGCACAGGTGgacaccagagacagagacacattttttttatcgAGAAACAAAGAAAGGAATATCTACAAGCAGGTTTGATCCCTTCCCAGATATCTGCTCAGAGGTTATGTCCAAAGGGGGTAGGGTTGACAGAGGAACGAGAGAGTTTTAGGGAGGAACATACAGGAAAGTGGGggggaggtagaaagagagagagaagagaactgaGTCTACACCGCTTATGAGGCTCGTTAGTCTGTTTGTCATGCTTTGGAAAAAGAGGGTGAAAAGGTACGACTCACTGAAATGTATCCTCTTGATAGAgttgaaaaaaaaacataattaggAACAAAAGTCTTGTCCGTACTGTACAATGCTTGCTTGGACAGGTTCTCAGTTTTTTTGAGGTTATTTTTGGCAGTTCCAATGCCTTTCATCTTCTTTTTGAGGCCAAGTAGCTGCTTCTTTGTCCATTCCGTTGCCATTTACATAAATCACTGTCACATTCAGTGGTTCGTCCTTCCATTTCAATTGTCTATTGTGGCAGGCGTTTCAAATGTTTGCTCTGgatttctctctctgtggatcACTGTGGGTATTTTCAGGCTGACAGAGGCCAGCTACAGTACACTCAATATAGAGTTTTAGTGTGACTCCTGTTGTTGCTCTACAGGCTTTATCTCCCAGAGCTTTGCTGCTGAGGAGGTGAAGTTGCTTGCGTTTGGTTACAAGATGAGTGCTTCTCCTTGTCTCTTAGTAACTTTGGCAGTGTAATAAAAAGGTTTGGATCATGTTTTTTCCTTCTTTGAATTCATTTGGGTTCACATCGGTACAGAGAGGTGAGTCCGGTGTCATTTTCTTGGCTCGCTAGCAAGGTAGTtcacttttttttaaaattatttttcttattattatttgtttagaATATTTGGACTTTTCTTTGTCTTCCTTAAAGCCCAAAAATGAATCATTAGATAAATAATTAGCCGTATTATGGAAGAGtttctgagggggaaaaaaaaattgcaccaTGAGTGTATCTTATCCCCTCTCCTACATCAGAACAGGGGTTTCCGGACTGGTGTCTGGCTTCTTAGATAGGGGACCTCAATCAGGACATGTCCATGGCCCAGGACACAGAGGAGCCTGTTCTATAGAcgcatctatctatccatctctcaGAGGTCTGGGCTGTTAGTGCACATGCTGGGGGTTAAGAGTCATCCCACTCCTGCTGCGTTAAAGGGAAATCCTCTCCAAGTGCTAAATTCAGATATCTCTTCTTCACAATAAGTGTGGTACCATAACGGGTCTCATGCAATGCAAGCCCCCGACATACACAGCATTGACTGGGCTTATGTTACTGAGGCCACGTGTTGGTCTGGCATATAACAATGCTTATCTTCACACGACATTATCAGAGTTCAATAACCAAGTCtggtgtgttttttgttgttgttgtaatagatGGGAAGTTCTGCTTCCGCATTGGTTTATTTTGAGCATTCAGTAAATTAAGCCCTAGCCATGCTAAACACAACAGTGGACCCCTTGACTAGTTTCGAGTTTGACAGAGAGAAAGTCTGTGCGGCTGAGAGACAGTCAGAACGATTTTTGGGGGGAGGTTGAGGAGTTGAGAAAACGAGGCCTTCGGGTAGCTAAGAAGTAGTCAACGGTGCAGTATTCACGGTAGGACCACTACAGATGCCGTACAAAAGAAGGAAAGGGTGCAGTGCGATCGATGGAGATTCCTCTGTTCATTTAGGATGGATGGCAGCTGTACTGTAGCATCAGTGGGAGTGACTGGGCGTGGCAGGGCGTGGCAGGGCGGGGTCAGCGAGAGGTGGCGTCCAGCAGTGCAGGGGTCGCTGGGGTGGTGGAGCGTGAGGCACTGCTGGAGCTAGCCTCCTTAGGACTCCCGGAGAGACTGCCTCCCCCACCACCGCTGGTCTGGCCGGGCAGGGAGAGTGGACCAGGGGGGGTGCTCTCTGAGTGTGTAGGGGGTGCGCTGGAGGAGGGGGTGCCCAGAGGAACACTGCTGCCCCCGGGGAGGCCCTGTAGACCCTGGCCACAGACGTGGTGGTGCTTCTCCCAGTCTTTGTGCTGGCAGAAGGAGCCGCAGTAGCGTGCCGTGTTGCAGCCGCTGCACGTCTCACTGGCCTTGCGTC

Function

NR:

description
PREDICTED: protein CBFA2T3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU601902 True 4761 lncRNA 0.43 2 62501787 62506601

Neighbor

gene id symbol gene type direction distance location
LOC110526300 tpc2l coding upstream 10099 62490082 ~ 62491688 (+)
LOC110526297 LOC106587264 coding upstream 37054 62460321 ~ 62464733 (+)
LOC110526295 LOC106587266 coding upstream 115455 62377872 ~ 62386332 (+)
LOC110526293 LOC106587174 coding upstream 151992 62346767 ~ 62349795 (+)
LOC110526291 LOC106587268 coding upstream 155155 62328353 ~ 62346632 (+)
LOC118965084 NA coding downstream 61448 62568049 ~ 62569967 (+)
LOC110526303 acsf3 coding downstream 141527 62648128 ~ 62685350 (+)
LOC110526307 LOC106587258 coding downstream 216844 62723445 ~ 62742080 (+)
LOC110526939 LOC106562161 coding downstream 246105 62752706 ~ 62947192 (+)
LOC110526308 LOC106562160 coding downstream 441517 62948118 ~ 62965825 (+)
G531418 NA non-coding upstream 179836 62321521 ~ 62321951 (+)
G531410 NA non-coding upstream 318436 62160521 ~ 62183351 (+)
G531346 NA non-coding upstream 444640 62056916 ~ 62057147 (+)
G531345 NA non-coding upstream 444990 62056564 ~ 62056797 (+)
G531341 NA non-coding upstream 448579 62052998 ~ 62053208 (+)
G531544 NA non-coding downstream 54262 62560863 ~ 62561065 (+)
G531511 NA non-coding downstream 58427 62565028 ~ 62565767 (+)
G531551 NA non-coding downstream 66271 62572872 ~ 62573091 (+)
G531553 NA non-coding downstream 68284 62574885 ~ 62575117 (+)
G531563 NA non-coding downstream 86972 62593573 ~ 62593787 (+)
G531406 NA other upstream 349569 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 522260 61971487 ~ 61979527 (+)
G528653 NA other upstream 2729703 59771708 ~ 59772084 (+)
G527450 NA other upstream 3722770 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 4129819 58318920 ~ 58408967 (+)
G532259 NA other downstream 313819 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 505657 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 526330 63032931 ~ 63198734 (+)
G532489 NA other downstream 801932 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 831635 63338236 ~ 63549030 (+)

Expression


Co-expression Network