G531553


Basic Information

Item Value
gene id G531553
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62574885 ~ 62575117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU601952
aaggaagccattcctcagtaaaagacacatgacagcccgcttggagtttgcaaaaagtaacgtaaagactctcagaccatgaaaaacaagattctctggtctgatgaaaccaaaattgaactctttggcctgattgccaagcgtcacatctggaggaaacctgccaccatccctacagtgaagcatggtggtggcagaatcatgctgtggggatgttcttcagtggcagggac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU601952 True 233 lncRNA 0.47 1 62574885 62575117

Neighbor

gene id symbol gene type direction distance location
LOC118965084 NA coding upstream 4918 62568049 ~ 62569967 (+)
LOC110526300 tpc2l coding upstream 83197 62490082 ~ 62491688 (+)
LOC110526297 LOC106587264 coding upstream 110152 62460321 ~ 62464733 (+)
LOC110526295 LOC106587266 coding upstream 188553 62377872 ~ 62386332 (+)
LOC110526293 LOC106587174 coding upstream 225090 62346767 ~ 62349795 (+)
LOC110526303 acsf3 coding downstream 73011 62648128 ~ 62685350 (+)
LOC110526307 LOC106587258 coding downstream 148328 62723445 ~ 62742080 (+)
LOC110526939 LOC106562161 coding downstream 177589 62752706 ~ 62947192 (+)
LOC110526308 LOC106562160 coding downstream 373001 62948118 ~ 62965825 (+)
LOC110526311 LOC106587159 coding downstream 430555 63005672 ~ 63068991 (+)
G531551 NA non-coding upstream 1794 62572872 ~ 62573091 (+)
G531511 NA non-coding upstream 9118 62565028 ~ 62565767 (+)
G531544 NA non-coding upstream 13820 62560863 ~ 62561065 (+)
G531510 NA non-coding upstream 68284 62501787 ~ 62506601 (+)
G531418 NA non-coding upstream 252934 62321521 ~ 62321951 (+)
G531563 NA non-coding downstream 18456 62593573 ~ 62593787 (+)
G531589 NA non-coding downstream 83413 62658530 ~ 62658844 (+)
G531596 NA non-coding downstream 94624 62669741 ~ 62670041 (+)
G532210 NA non-coding downstream 111034 62686151 ~ 62686431 (+)
G531406 NA other upstream 422667 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 595358 61971487 ~ 61979527 (+)
G528653 NA other upstream 2802801 59771708 ~ 59772084 (+)
G527450 NA other upstream 3795868 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 4202917 58318920 ~ 58408967 (+)
G532259 NA other downstream 245303 62820420 ~ 62822616 (+)
G532237 LOC106591742 other downstream 457814 63032931 ~ 63198734 (+)
G532489 NA other downstream 733416 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 763119 63338236 ~ 63549030 (+)

Expression


Co-expression Network