G532399


Basic Information

Item Value
gene id G532399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63049950 ~ 63099165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU602912
AAGTCATTTCAGAAAATTAGTCAAATTAACCGCATGGGTGAGCTTACTTTCACTCAGAGCACAATTTAGTTACATGGGGAGTTTTTCTCCTGGAATTTCTATTTTGCATCAGGCTATGTCACTACAtgctggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctctgcatggccggttcccctctcaccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactggtgctctttcatgccatccctaggaggggtgcgtcacttgagtgggttgagtcactgacgtgatcttcctgtctgggttggagccccccccttgggttgtgccgtggcggagatatttgtgggctatactcggccttgtctcaggatggtaagttggtggttgaagatatccctctggtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttatatccttcctgtcatcggatggggccacagtctgtggtcggatttaccaaatggagggagagctttgtacacatctctgtgtgtggagtacaggtgatctagatttttttctccctctggttgcacatttaacatgttgatagaaatttggtagaactgatttaagtttccctgcattaaagtctcctcccactaggagcgtcgcctctgggtgagtggtttcctgtttgcttatttccttatacagctgactgagtacCAGCTTTGTGAAATCATGTGTTTTCAACTTGGCTgttgacagagggagaaagaacaggtagcctagtagagTAAAGTTGAGTAAACAAGTTGTCTGTCCTTTTGCCATGCTTCTTGGCTCAACATTAGGAAAAGTCCAGCCTTGCAACTAAAGAATTTGCTGGTGTTGGGAAAATAAATTGTAGTATTATGTGACTTTCTTCCACCGGGAAATCTGATGTATTCAATTCTGAGTTtgaatcccaatattacactttatacacGTCATAGAATACtgaatataacaaaaccgttagACATAGAAACTCCGGATTTTctgtataaaaaaaatctaataatgtTGATAAATTATTAAATTATGAAAAATAAGAATTTCACTCCACCCGTGAGGCCACTAGATAATTTGACTGCAGGACAGGGCTACTACCACATCCCAGTTGAAAGCACCTTCTGACATGTATCAGTGTGCGATCTCATTCTTATGGCCACTCGTAGGAGTGGAGTAGTTCGTTCATAGCCATCCTCCCTTTTTTCTGTGCAAAATTAGTTTGCTATAGTATCGATGAAATGTAAAATGAGAGGCTTTCATTGACAAACAGAAAAAAGCTGACGTGCTTTGTAGCAAATAGGTGAGCGTACAGCGTACAGTATGTTGTCGTGTACTTATATTACTGTAGATCTAGGGATGGATACTGGCTGAACTGTATCATGTACCTCATCAGTGTAATTACAACATTTAAAACAGCCATTGTTAATAGGAACTGTGTCAGGGCTAACGAATTAGCAGATTGTCTCTCTGATGGTCTCATTGGTATCATTCATTCATGTTTTTGAAACAGATGGGCAATGACTGATGCAAGGACAGAGGGATGGATGCcatgcttgcctgcctgcctgcttgcttgCTTGCCTGGCACTGTAATGCTGTTGATGTCTCTGAACTGTCATGCTCTTAGTGCCTGATGTTACATAAGACTGGTAAGGTCATTGTGGCTCACTCTCACAACCACTGACTGTCCTTAGGCCTTGTGATTCCAGGCTGGaacctgtgtgttgtgttgggtatCACACTACAGGAAAGGACATGATGTACAGGTACGTGTACAGATAAAAACAGCCATCTGCCAGCAGCCATTTAATTTAGCGttttcacgtgtgtgtgtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU602912 True 1916 lncRNA 0.44 2 63049950 63099165

Neighbor

gene id symbol gene type direction distance location
LOC110526311 LOC106587159 coding upstream 34413 63005672 ~ 63068991 (+)
LOC110526308 LOC106562160 coding upstream 84125 62948118 ~ 62965825 (+)
LOC110526939 LOC106562161 coding upstream 102758 62752706 ~ 62947192 (+)
LOC110526307 LOC106587258 coding upstream 307870 62723445 ~ 62742080 (+)
LOC110526303 acsf3 coding upstream 366748 62648128 ~ 62685350 (+)
LOC118965038 LOC106562187 coding downstream 20062 63119227 ~ 63176699 (+)
LOC110526312 LOC106562187 coding downstream 64687 63163852 ~ 63175505 (+)
LOC110526940 LOC106587158 coding downstream 102237 63201402 ~ 63210821 (+)
mcee LOC106587249 coding downstream 143221 63242386 ~ 63243598 (+)
apba2b LOC106587247 coding downstream 151427 63250592 ~ 63323571 (+)
G532381 NA non-coding upstream 53072 62996542 ~ 62996878 (+)
G532374 NA non-coding upstream 65762 62983938 ~ 62984188 (+)
G532372 NA non-coding upstream 68115 62981613 ~ 62981835 (+)
G532370 NA non-coding upstream 71463 62978271 ~ 62978487 (+)
G532430 NA non-coding downstream 89937 63189102 ~ 63190085 (+)
G532248 LOC100196237 non-coding downstream 120297 63219462 ~ 63228632 (+)
G532251 NA non-coding downstream 122006 63221171 ~ 63225329 (+)
G532240 NA non-coding downstream 122853 63222018 ~ 63226987 (+)
G532259 NA other upstream 227334 62820420 ~ 62822616 (+)
G531406 NA other upstream 897732 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 1070423 61971487 ~ 61979527 (+)
G528653 NA other upstream 3277866 59771708 ~ 59772084 (+)
G532489 NA other downstream 209368 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 239071 63338236 ~ 63549030 (+)
LOC110526344 LOC106587225 other downstream 1669982 64769099 ~ 64781704 (+)
G534453 NA other downstream 1691157 64790322 ~ 64847104 (+)
G534653 NA other downstream 2014115 65113280 ~ 65169563 (+)

Expression


Co-expression Network