G532240


Basic Information

Item Value
gene id G532240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63222018 ~ 63226987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU602740
tcacttgagtcattttctattaaggcatctttacttttattcaagtatgacaattgggtcgTTTTTCCACCACAGCATGTTACGTGTACATAGTCTGAATATACTTACAGAATGGGAAGGTCTTGGATGATGGTAAATGCAGTGTGACGCACATACATAGATAACATACTGAATCACACTATAAACCTCTATTACACAAAGAGGAAGAAGAACCCATTACATTTGAGGAACGTATTTACATCAAACTTACATGGTCAAGTGGTTTGTCATAGAGTAATTTCTGTCACCAGTGAAATCATGCATTCCAGTCACCAATACACTGCATGGGTTATTTTACACAAACATGGAAAGTGCATGTATAGGGTTAAACTAAATCATCTTTAAAACATCAAGTGAATTTTATTAGAAcaaatgtacaaaataaaaatattttccaACTCTTGCCTTCAACCTCCTACCAACATTTGTTTGCTGTACAATTAAAACAATCCTTCCTGTAAATAGCATTGTGTATTTCATATCTCAATACCCCACTTTATCAATCAAGTCTAATTAAATCCCTTCACCCCATGTAAGGTAACAGATATGTCAAAGAACCGGTTTCAGATGTCCCCAAAGGTCCAGACCCAGAGAGTAACGAGGGTAAAACCCGACAGGCCGTAGCACCCGGTCTTGAAAATGTCCTAGGCCTGAATATTTCGACATAATGGGTGTGCCAGAAAACAGGTTGTTCTAGTAGGCGATTCAGTGGCAGGTAAAAAAACAGGTTCATGAAACCCACCAACGACACACTATTGACATTCTGGATTACTCAATCCAGTCTCTGGACGAGAGACCCTACTAGTTAAGactatttgattattaaccaaaTATTGTCTCATACTGTGAGTCAAGGGGATAGGGGACAACCATAACAACGAGAAAGATTGAGAGGTTACATAGAGTACTAGTTACTATCAGGAAGGCCATTTTATATCCAAAGTGCTCATATAAAGATGACACCTATATGGTCCAGTTGATTGGACGTAGTCGATAATAAAGTGTACTGCAAAATGTACTGTCAAATAGCCCTCTAAAGGGCCTTCACCTTCAGTATGCCAGACAGACACGTGTGTTTGAATGAGGTACAGTTCATGTTTACATCAGTAAAACTACACAGTGAGGAGAGTTTCACTGCAAAGGGTGCCAATCCAAATATTTAAACATTTCCTGTAACTGCGGTGACTGACAACACAGCATGATGGGATACTGGAGGATTAGGTCTTCTTCTTCAGATCCTCAAAGCGCCGTGACAGGTCATCAAAGTCGATGTCATCAGAGCTCGCAGTGTTTCGTCCAACTCCAAAGGAGGAAGTGGGAAGCGTGTCGGGAACTGAGGGCAGCTCAGGGAGGGCGTTGTTATCGTAGATCTGGGATGAAGGCCCGGGGCCTGTGGAAAGAACATATGTTTAGATTGACATTACAAATACACCCCAATGCAACCGTTATGCAAAAAGAAAGCAATACTATCGCTGAAGAGATTGACATGTAGGAAAGGAAATATTCATTGAAAACAACTTACCAG

Function

NR:

description
IST1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU602740 True 1564 lncRNA 0.40 2 63222018 63226987

Neighbor

gene id symbol gene type direction distance location
LOC110526940 LOC106587158 coding upstream 11197 63201402 ~ 63210821 (+)
LOC110526312 LOC106562187 coding upstream 46513 63163852 ~ 63175505 (+)
LOC118965038 LOC106562187 coding upstream 101058 63119227 ~ 63176699 (+)
LOC110526311 LOC106587159 coding upstream 206481 63005672 ~ 63068991 (+)
LOC110526308 LOC106562160 coding upstream 256193 62948118 ~ 62965825 (+)
mcee LOC106587249 coding downstream 15399 63242386 ~ 63243598 (+)
apba2b LOC106587247 coding downstream 23605 63250592 ~ 63323571 (+)
LOC100750227 LOC106587244 coding downstream 111542 63338236 ~ 63549030 (+)
LOC110526321 LOC106562150 coding downstream 301483 63528470 ~ 63675197 (+)
golm2 casc4 coding downstream 457076 63684063 ~ 63699115 (+)
G532237 LOC106591742 non-coding upstream 23284 63032931 ~ 63198734 (+)
G532430 NA non-coding upstream 31933 63189102 ~ 63190085 (+)
G532412 NA non-coding upstream 70607 63097382 ~ 63151411 (+)
G532399 NA non-coding upstream 122853 63049950 ~ 63099165 (+)
G532447 NA non-coding downstream 13017 63240004 ~ 63240389 (+)
G532448 NA non-coding downstream 14194 63241181 ~ 63241419 (+)
G532449 NA non-coding downstream 14620 63241607 ~ 63241934 (+)
G532407 NA non-coding downstream 17883 63244870 ~ 63245239 (+)
G532403 NA non-coding downstream 18469 63245456 ~ 63246971 (+)
G532259 NA other upstream 399402 62820420 ~ 62822616 (+)
G531406 NA other upstream 1069800 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 1242491 61971487 ~ 61979527 (+)
G532489 NA other downstream 81546 63308533 ~ 63343755 (+)
LOC110526344 LOC106587225 other downstream 1542160 64769099 ~ 64781704 (+)
G534453 NA other downstream 1563335 64790322 ~ 64847104 (+)
G534653 NA other downstream 1886293 65113280 ~ 65169563 (+)

Expression


Co-expression Network