G532866


Basic Information

Item Value
gene id G532866
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63245496 ~ 63246627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU603478
tcaaaactatgaactaacacatatggaatcatgtagtaactacaaaaagtgttaaacaaatcaaactatattttatgcactcaaatgcatttcaattaacgggTGTGCCCtcataaaagttcatttgtggaatttctttccttcataaAGCGTTTgacccaatcagttgtgttgtgacaaggtaggggggtatacagaagatagccttatttggtaaatgaccaagtccatattattgcaagaacagctcaaaaaagcaaagagaaacatcaagacatgaaggtcagtcaatacggaacatttcatgAACTTTGAACGTTTGTTCCAAGTGCAGCCGCAAAAACCATCTagcgatatgatgaaactggctctcatgaggaccgccacaggaatggaagacccagagttacctctgctgcagaggataagttcattaaagttaccagcctcagaaattgcagctcaaagaaatgcttcagagttgaagtaacagacacatctcaacatcaactgttcagaggagactgtgtgaatcaggccttcatggtcgaattgctgcaaagaaaccactactaaaggacaccaagaagaagagacttgcttgggccaaaaaaccagagcaatggacattagacaggtggaaatttgtcctttggtctcgagtccaaattggagatttttggttccaaccgccatgtctttgtgagacgcggtgtgggtgaacggatgatctccgcatgtgtatttcccacagtaaagcatggaggaggaggtgttatagtgtgggggtgctttgctggtgacactgtgatttatttagaattaaccagcatggctgccacagcattctgcaacaatacaacatcacatctggtttgggcttagtgagagtatcatttgtttttccaacaggacaatgactcaacacacctccaggatgtatAAGGGCAAATTTaacaagaaggagaatgatggagtgttgcatcagatgacctggcctccacaatctccctacctcaaccaaattgagatggtttgggatgagtcggacagcagagtgaaggaaaagcagccaacaagtgctcagcatacagtgccttgcgaaagtattcggcccccttgaactttgcga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU603478 True 1132 lncRNA 0.43 1 63245496 63246627

Neighbor

gene id symbol gene type direction distance location
LOC110526941 LOC106562155 coding downstream 4843 63235956 ~ 63240653 (-)
LOC110526314 LOC100196237 coding downstream 10213 63224573 ~ 63235283 (-)
LOC110526317 LOC100196237 coding downstream 21334 63219436 ~ 63224162 (-)
dhodh dhodh coding downstream 47368 63189073 ~ 63198128 (-)
LOC118964918 LOC106598822 coding downstream 101859 63140848 ~ 63143637 (-)
LOC110526320 dhso coding upstream 79187 63325814 ~ 63330232 (-)
terb2 terb2 coding upstream 88289 63334916 ~ 63337941 (-)
cilp LOC106587239 coding upstream 518033 63764660 ~ 63773065 (-)
igdcc3 LOC106562146 coding upstream 577260 63823887 ~ 63944930 (-)
igdcc4 LOC106587237 coding upstream 706406 63953033 ~ 64013404 (-)
G532870 NA non-coding downstream 270 63244870 ~ 63245226 (-)
G532865 NA non-coding downstream 18653 63222010 ~ 63226843 (-)
G532899 LOC106562187 non-coding downstream 69511 63173939 ~ 63175985 (-)
G532871 NA non-coding downstream 105157 63080820 ~ 63140339 (-)
G532886 NA non-coding downstream 236049 63009166 ~ 63009447 (-)
G532923 NA non-coding upstream 1675 63248302 ~ 63249004 (-)
G532924 NA non-coding upstream 2532 63249159 ~ 63249467 (-)
G532970 NA non-coding upstream 57459 63304086 ~ 63304969 (-)
G532974 NA non-coding upstream 62708 63309335 ~ 63309812 (-)
G532932 NA non-coding upstream 76207 63322834 ~ 63327180 (-)
LOC110526310 LOC106587159 other downstream 255218 62985486 ~ 62991995 (-)
G532766 NA other downstream 390489 62822905 ~ 62855007 (-)
G532763 NA other downstream 392679 62851696 ~ 62852817 (-)
LOC110526302 LOC106562167 other downstream 687097 62500665 ~ 62566214 (-)
znf536 LOC106562015 other downstream 3548533 59507092 ~ 59698393 (-)
G534201 NA other upstream 1251826 64498453 ~ 64499614 (-)
G534349 NA other upstream 1332171 64578798 ~ 64614796 (-)
G534603 NA other upstream 1608868 64855495 ~ 64895099 (-)
LOC110526365 LOC106587205 other upstream 2377362 65600097 ~ 65765382 (-)

Expression


Co-expression Network