G533089 (LOC106562151)


Basic Information

Item Value
gene id G533089
gene name LOC106562151
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63493691 ~ 63499934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU603722
CTGTTCTTGTTGGGGATGatgcctctctccacctcctggtGGTTCTTGCCAATGCGTATGGCGAGCCAGGAGCCCAGCTTGCCGTTGTAGAGGGTGTCCACTACACGGAAAACCTCTCCCTTGTTGAAGCTCAGGCCGTACGGAGACTCCTTCTCATACTCAAAGTGGGTCCGGATGTAGAACGAGTCACCCACATCTGACTCTACTATCCGACGGTAAACATCCTTCTTCTTCTGGGCCAGAATGGTGACCTCTTCACCCCTGGGAAGGTCTAGGAGGAACAGCACAGCCTCCTCTCGGATGATGTTAGCAAAGTCTACGTTGTTTacCCTGAGAATCTGGTCTCCTTCCTCCAGACCTTCCTTGGCAGCTGGGCTGTCCTCCAGGACTCCGGCTACAAAGATGCCCACGTCGTTCCCTCCGGCCAGCCTCAGGCCAACACTCTCCCCCTTCTTAAACTTCACCAGCTTCATACTCGGCCTGAGGATGCTGTCATCATGACCAGCGCTGGGCACTGGGGCATCAGAGGGGCTGACTGGAAGGTCAACATCAGGCTGGCCAGGCTGGGCATACACTGGCTTTGGTTCTGGCAGTGGGGGCAGTTTGTCCTCTCTGGCCAGTGGCTGGTCGCTGATGGCCTGGATTAGGGCCTCCTGGGAACCTTTAACAGGAGTCGACATCACCCCGGGCTTGGAAATCCTCTCCTCATCTCGACTTCTGTGGCTAGAAAAAGAAACAGTTGATTATTTATTTTGGGTTTGTTCATTATTTCCTTTGTAGGCCTAACATGTGAGATGAAGAATGGTAGCAATTATGAAGAGAGAATAGAAAGGT

Function

NR:

description
PREDICTED: tight junction protein ZO-1-like isoform X15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU603722 True 834 lncRNA 0.53 5 63493691 63499934

Neighbor

gene id symbol gene type direction distance location
terb2 terb2 coding downstream 155750 63334916 ~ 63337941 (-)
LOC110526320 dhso coding downstream 163459 63325814 ~ 63330232 (-)
LOC110526941 LOC106562155 coding downstream 253038 63235956 ~ 63240653 (-)
LOC110526314 LOC100196237 coding downstream 258408 63224573 ~ 63235283 (-)
LOC110526317 LOC100196237 coding downstream 269529 63219436 ~ 63224162 (-)
cilp LOC106587239 coding upstream 264726 63764660 ~ 63773065 (-)
igdcc3 LOC106562146 coding upstream 323953 63823887 ~ 63944930 (-)
igdcc4 LOC106587237 coding upstream 453099 63953033 ~ 64013404 (-)
LOC110526332 LOC106562143 coding upstream 549511 64049445 ~ 64084887 (-)
LOC110526336 LOC106562141 coding upstream 917930 64417864 ~ 64492865 (-)
G533090 LOC106562151 non-coding downstream 4125 63488831 ~ 63489566 (-)
G532932 NA non-coding downstream 166511 63322834 ~ 63327180 (-)
G532974 NA non-coding downstream 183879 63309335 ~ 63309812 (-)
G532970 NA non-coding downstream 188722 63304086 ~ 63304969 (-)
G532924 NA non-coding downstream 244224 63249159 ~ 63249467 (-)
G533048 NA non-coding upstream 2746 63502680 ~ 63527810 (-)
G533055 NA non-coding upstream 6781 63506715 ~ 63508283 (-)
G533181 NA non-coding upstream 164110 63664044 ~ 63664335 (-)
G533182 NA non-coding upstream 164683 63664617 ~ 63664917 (-)
G533184 NA non-coding upstream 167542 63667476 ~ 63667758 (-)
LOC110526310 LOC106587159 other downstream 503413 62985486 ~ 62991995 (-)
G532766 NA other downstream 638684 62822905 ~ 62855007 (-)
G532763 NA other downstream 640874 62851696 ~ 62852817 (-)
LOC110526302 LOC106562167 other downstream 935292 62500665 ~ 62566214 (-)
znf536 LOC106562015 other downstream 3796728 59507092 ~ 59698393 (-)
G534201 NA other upstream 998519 64498453 ~ 64499614 (-)
G534349 NA other upstream 1078864 64578798 ~ 64614796 (-)
G534603 NA other upstream 1355561 64855495 ~ 64895099 (-)
LOC110526365 LOC106587205 other upstream 2124055 65600097 ~ 65765382 (-)

Expression


Co-expression Network