G533048


Basic Information

Item Value
gene id G533048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63502680 ~ 63527810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU603674
GGTATACTTAAAATTGTGTCACAAAGGAGAAAAAAAGTCAGCCACACGTGAAGAGCTAATATCCAATTGAAGCTGTGTTATCATATATAAAGAAAATAGTACTGGTGTGCCGTAATATATGGTCTATTAGTACAAAAATACATTTCAGGGCACAAAATAATACAGCATCCAGTATCACAAATAAATGAGGGGGACAGAGCACACCCTTTTAAAGAACAGGTTTGAAAAGTTGTTTAACCCAAGCACTTTCCTCTTTTGCAAATAACCATAAAAAGATTGTGTGACAATTATTATTTATATGTAGTGTGAATATATTGGTAGAAAATGTGGATTTTATTACTGCTAATAGTTACAAGTTCCAAGGCTCAAGGGTATAACCAGATTAGAAAGTAAACCATGGtcaattcatttattttttaaaacagttTTCTCTAAGTtttatacaaaataacaaagacatACAAAAGTTCATTTACAAACCAAGAACCAAGGCCATATGCTAACTTTATTTACAGCCACTTGTCTTTTTTGtcatgtttttctttttcttctgaAGTCATATGCATAGCAGATAAAGAAAGAATACCTTTATTCGCTTCAATTGTTCTTGTGCGCTAAACCCAAGTTCATTTATACAGTGGGTTGACAAAATGGCAAGAGAACTTCATTTGTCCATAATTTATCATCATAACTTAGAAGAACCCAGAGGTTTTTACTGAAAAAGTGAATAATATGCAGATAAGGCATCACTGCTTGTTAATGTAAGAGGGTTTTAACATGGTGAGGGAGAACTGAGCAGGCTTCTGGACCTGAGTCATAGCACATGCATAGATCTTGATACAGCAGGAGTAGAATTCAGGTAGTCAATACAAAGTGAATCCAATGTCAGtttacagaaagaaagaaagaaaaaaggaaaGGAAGGAAGAGCCATTCTAGTCACAGGATGAACATGTTCGAGGCATATGAGTTGGGCTTTAAATCCACCTCAAAGTATTCCACCTTCATCTTCATTTTCTCTTCTGCAGATGCTTGCCTACTTCACTATCACCATAATCATTACCACAGAGCCATACATTTAGAAAATGTGGCTCTGCATTGACATCATCACTTTACTGCCCACCTCCCTGGCACCGAATTCCAAAACCATCACAAATCTGTCAATGTGGAAAAAAATATGACCGTCTTTGTAAGTCAGCCAATTCAAAAGGTGACAAAAAAGGTTGAATTCTGATTCTTGAATTCTGATTTCTAGAATTGAATTTAAAATTATATttataccatatactatatatactgtatgcatATATAGTATAAATACACCTACATGTATGTCCATCTACTTCAAAAGTAAAAACCTGAAACTATTTTCCTGTTATGTAACAATTCAAAGTTAAAACTTGGCGTATAATGTGATGAGTTACTCAGTGGCACAGGGCATGCATTCCATCACTGGTTAAATCGTTTTGTATTTTCTTCAAGACCTCGGAAAGAGTTAAAGGACAGCACATAGGGGCAACTTCAGTCTCCTTCCATCTTCCATGGGCACAGTAAACAACACTGGAGCACTGGGTGTAAATACATCATTGTGTATGGTCCACCCCTGgagaaatggtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagacacggctgagacagacagtgagatgGCTAGCTAAAGGGTACTCACTGGCAAGCTCAAACAGGTCAGGCTCCTCTCTGGCCAGCTTCTCTCTCGCCACGTCTGCGATGGACCCAAAGATCACCACAGGCCTCAGGAAACCAGCTGGATAACAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU603674 True 1832 lncRNA 0.38 2 63502680 63527810

Neighbor

gene id symbol gene type direction distance location
terb2 terb2 coding downstream 164739 63334916 ~ 63337941 (-)
LOC110526320 dhso coding downstream 172448 63325814 ~ 63330232 (-)
LOC110526941 LOC106562155 coding downstream 262027 63235956 ~ 63240653 (-)
LOC110526314 LOC100196237 coding downstream 267397 63224573 ~ 63235283 (-)
LOC110526317 LOC100196237 coding downstream 278518 63219436 ~ 63224162 (-)
cilp LOC106587239 coding upstream 236850 63764660 ~ 63773065 (-)
igdcc3 LOC106562146 coding upstream 296077 63823887 ~ 63944930 (-)
igdcc4 LOC106587237 coding upstream 425223 63953033 ~ 64013404 (-)
LOC110526332 LOC106562143 coding upstream 521635 64049445 ~ 64084887 (-)
LOC110526336 LOC106562141 coding upstream 890054 64417864 ~ 64492865 (-)
G533089 LOC106562151 non-coding downstream 2746 63493691 ~ 63499934 (-)
G533090 LOC106562151 non-coding downstream 13114 63488831 ~ 63489566 (-)
G532932 NA non-coding downstream 175500 63322834 ~ 63327180 (-)
G532974 NA non-coding downstream 192868 63309335 ~ 63309812 (-)
G532970 NA non-coding downstream 197711 63304086 ~ 63304969 (-)
G533181 NA non-coding upstream 136234 63664044 ~ 63664335 (-)
G533182 NA non-coding upstream 136807 63664617 ~ 63664917 (-)
G533184 NA non-coding upstream 139666 63667476 ~ 63667758 (-)
G533185 NA non-coding upstream 143209 63671019 ~ 63671251 (-)
G533193 NA non-coding upstream 151978 63679788 ~ 63680422 (-)
LOC110526310 LOC106587159 other downstream 512402 62985486 ~ 62991995 (-)
G532766 NA other downstream 647673 62822905 ~ 62855007 (-)
G532763 NA other downstream 649863 62851696 ~ 62852817 (-)
LOC110526302 LOC106562167 other downstream 944281 62500665 ~ 62566214 (-)
znf536 LOC106562015 other downstream 3805717 59507092 ~ 59698393 (-)
G534201 NA other upstream 970643 64498453 ~ 64499614 (-)
G534349 NA other upstream 1050988 64578798 ~ 64614796 (-)
G534603 NA other upstream 1327685 64855495 ~ 64895099 (-)
LOC110526365 LOC106587205 other upstream 2096179 65600097 ~ 65765382 (-)

Expression


Co-expression Network