G533351


Basic Information

Item Value
gene id G533351
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63812702 ~ 63812909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU604014
gaatagcattctcacataggtgttccttttgtccaggtgtgaaagggcagtgtgaagtgcaatagagattgcatcatctgtggatctgttggtgcggtatgcaaattggagtgggtctagggtttctgggataatggtgttgatgtgagccatgaccagcctttcaaagaacttcatggctacagacatgtgTACTATgcgtcggtag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU604014 True 208 lncRNA 0.46 1 63812702 63812909

Neighbor

gene id symbol gene type direction distance location
LOC110526326 eif3j coding upstream 49815 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 55464 63730434 ~ 63757238 (+)
LOC110526325 ctdspl2 coding upstream 84872 63702297 ~ 63727830 (+)
golm2 casc4 coding upstream 113587 63684063 ~ 63699115 (+)
LOC110526321 LOC106562150 coding upstream 137505 63528470 ~ 63675197 (+)
LOC110526331 LOC106587235 coding downstream 213776 64026685 ~ 64032292 (+)
insyn1 LOC106587233 coding downstream 405265 64218174 ~ 64277755 (+)
LOC110526337 LOC106587231 coding downstream 681910 64494819 ~ 64499621 (+)
LOC110526343 LOC106587228 coding downstream 940120 64753029 ~ 64765798 (+)
LOC110526344 LOC106587225 coding downstream 956190 64769099 ~ 64781704 (+)
G533339 NA non-coding upstream 11878 63795729 ~ 63800824 (+)
G533337 NA non-coding upstream 17154 63795205 ~ 63795548 (+)
G533243 NA non-coding upstream 54738 63757438 ~ 63757964 (+)
G533245 NA non-coding upstream 67963 63744493 ~ 63744739 (+)
G533359 NA non-coding downstream 11020 63823929 ~ 63824926 (+)
G533360 NA non-coding downstream 13946 63826855 ~ 63827729 (+)
G533410 NA non-coding downstream 125480 63938389 ~ 64001796 (+)
G533584 NA non-coding downstream 233326 64046235 ~ 64046477 (+)
G533586 NA non-coding downstream 235542 64048451 ~ 64048682 (+)
G532489 NA other upstream 468947 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 473204 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 613968 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 797716 63005672 ~ 63068991 (+)
G532259 NA other upstream 990086 62820420 ~ 62822616 (+)
G534453 NA other downstream 977413 64790322 ~ 64847104 (+)
G534653 NA other downstream 1300371 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 1343600 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 2034714 65847623 ~ 65849441 (+)

Expression


Co-expression Network