G533410


Basic Information

Item Value
gene id G533410
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63938389 ~ 64001796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU604074
ttaatatttggtacagaaacctttgtttgcaattacatagatcatacgtttcctgtagttcttgaccaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcatctagagcagtgatgttttggggctgttgctgggcaacacagactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccaggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctcgtccctttgcagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtttggtgttctttggatgcaactcagcattctttgtcctccaaaacacgacgagttgagtttttaccaaaaagttatattatggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU604074 True 562 lncRNA 0.45 2 63938389 64001796

Neighbor

gene id symbol gene type direction distance location
LOC110526326 eif3j coding upstream 175502 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 181151 63730434 ~ 63757238 (+)
LOC110526325 ctdspl2 coding upstream 210559 63702297 ~ 63727830 (+)
golm2 casc4 coding upstream 239274 63684063 ~ 63699115 (+)
LOC110526321 LOC106562150 coding upstream 263192 63528470 ~ 63675197 (+)
LOC110526331 LOC106587235 coding downstream 24889 64026685 ~ 64032292 (+)
insyn1 LOC106587233 coding downstream 216378 64218174 ~ 64277755 (+)
LOC110526337 LOC106587231 coding downstream 493023 64494819 ~ 64499621 (+)
LOC110526343 LOC106587228 coding downstream 751233 64753029 ~ 64765798 (+)
LOC110526344 LOC106587225 coding downstream 767303 64769099 ~ 64781704 (+)
G533360 NA non-coding upstream 110660 63826855 ~ 63827729 (+)
G533359 NA non-coding upstream 113463 63823929 ~ 63824926 (+)
G533351 NA non-coding upstream 125480 63812702 ~ 63812909 (+)
G533339 NA non-coding upstream 137565 63795729 ~ 63800824 (+)
G533337 NA non-coding upstream 142841 63795205 ~ 63795548 (+)
G533584 NA non-coding downstream 44439 64046235 ~ 64046477 (+)
G533586 NA non-coding downstream 46655 64048451 ~ 64048682 (+)
G533668 NA non-coding downstream 111568 64113364 ~ 64113821 (+)
G533697 NA non-coding downstream 143825 64145621 ~ 64145854 (+)
G533701 NA non-coding downstream 145791 64147587 ~ 64147826 (+)
G532489 NA other upstream 594634 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 598891 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 739655 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 923403 63005672 ~ 63068991 (+)
G532259 NA other upstream 1115773 62820420 ~ 62822616 (+)
G534453 NA other downstream 788526 64790322 ~ 64847104 (+)
G534653 NA other downstream 1111484 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 1154713 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1845827 65847623 ~ 65849441 (+)

Expression


Co-expression Network