G533889


Basic Information

Item Value
gene id G533889
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64393161 ~ 64393475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU604577
gagagggagaaaccctCAGCCAAGTCCACTCAGAGAGAGCACATAAAACACCCAAACACGTCAGTATCTGCAGCAGCGATCCGTTTACTGACAGGTGCCAAACATTTTAAGAAAAATCTATAGTACGAGCCTAGTACCAGGACATAGTCATTGCAGGCCTGCATGCATACCCTAAAGTGGTGCAAAAGAAGCATGTCAGCTGAATTCGTCATTGGCATTCTCCGGGATGTGACATTTGAGCGCCACTGTAAACGCTGTTTGCAATGTGAGCACTGCCTGATCTGGATGGGTGAGTGAGACTGGCATTGAGCGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU604577 True 315 lncRNA 0.49 1 64393161 64393475

Neighbor

gene id symbol gene type direction distance location
insyn1 LOC106587233 coding upstream 115406 64218174 ~ 64277755 (+)
LOC110526331 LOC106587235 coding upstream 360869 64026685 ~ 64032292 (+)
LOC110526326 eif3j coding upstream 630274 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 635923 63730434 ~ 63757238 (+)
LOC110526325 ctdspl2 coding upstream 665331 63702297 ~ 63727830 (+)
LOC110526337 LOC106587231 coding downstream 101344 64494819 ~ 64499621 (+)
LOC110526343 LOC106587228 coding downstream 359554 64753029 ~ 64765798 (+)
LOC110526344 LOC106587225 coding downstream 375624 64769099 ~ 64781704 (+)
chrna5 LOC106587222 coding downstream 439149 64832624 ~ 64851098 (+)
LOC110526346 NA coding downstream 461501 64854976 ~ 64858185 (+)
G533864 NA non-coding upstream 40039 64352890 ~ 64353122 (+)
G533766 NA non-coding upstream 182112 64210515 ~ 64211049 (+)
G533762 NA non-coding upstream 184761 64208142 ~ 64208400 (+)
G533761 NA non-coding upstream 185252 64207703 ~ 64207909 (+)
G533898 NA non-coding downstream 11455 64404930 ~ 64406861 (+)
G533903 NA non-coding downstream 21633 64415108 ~ 64415435 (+)
G533907 NA non-coding downstream 22243 64415718 ~ 64416829 (+)
G533953 LOC100194703 non-coding downstream 110631 64504106 ~ 64507098 (+)
G533991 NA non-coding downstream 160389 64553864 ~ 64573072 (+)
G532489 NA other upstream 1049406 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1053663 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1194427 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1378175 63005672 ~ 63068991 (+)
G532259 NA other upstream 1570545 62820420 ~ 62822616 (+)
G534453 NA other downstream 396847 64790322 ~ 64847104 (+)
G534653 NA other downstream 719805 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 763034 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1454148 65847623 ~ 65849441 (+)

Expression


Co-expression Network