G533953 (LOC100194703)


Basic Information

Item Value
gene id G533953
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64504106 ~ 64507098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU604645
ACTCTACTTTATTTAGGTTGAAACTTGATGCCTCTATGTCCCCATACAATACATTCAGTATATACATTTGGCAATGAGGGACTGTACAGATATGTTATAGTAGTGAATACATACACGGGAAGAAAATGTACACAAAAGCATTAAAACCACTTGACCTCAGTGGCTAGAGAGACACCGAGTAAGTCTATGGCTGATGGCAACACGCACACACTTCTTTGAGGGTGAGAAGGACTAGTCCAGGTTCCCAGAGAGACATAATGTGAAGAGTGAGTCTGCTGATTGAGACAAAGCTCCTTCTCTGCCTTCCAGAAtcacctcccttcctccctcctagTCAGGCGAGGGGACTTCCTCCGTGCAGCGTGGACAACGTACGTGGGACCTTGCCTACAGTAACATGCATCTGTCAGCAGCCCTGAATAAAGATCCTCCTCTTCTTTATGTTTCATCTCTGCCACACAGGAACATTAAgacatatagtgcattcggaaagtatttagaccccttgactttttccaaattttgttacattatagccttattctaaactggattaaatcatttttttccctcatcaaatttacacaataccccataacgacaaagcaaaaacaaatgtagacatttttgcaaattaaaaaaacatgaaaatatcacatttacataagtattttgaCGCGCCACTCGgaactttgttgaagaaccttggCAGAGAatacagtcttgagtcttcttgggtatgacgctacaagcttggtacacctgtatttggggagtttctcccatttttttatgaagatcctctcaagctctgttaggttagATGGGGGGCGTCGCTGCACagtcattttcaggtctctccagagatgtttgatcgggttcaagtccggactctggctgggccactcaaggacattcagagacttgtcccgaagccactcctgcattgtcttggctgtgtgagtcttcgccaaagagttcaatgttgggtttatcagaccaaagaatcttgctTCTTACggtctgagagtctttgggtgccttttggcaaactccaaacgggctgtcatgtgccttttactgaggagtggcttcagtctggccactctaccacaaaggcctgattggttgagtactgtgtagatggttgtccttctgtaaggttctcccatctccacagatgaactctggagctctttcagagtgaccatcgggttcttggtcacctccctgaccaaggctcttctccaccgattgctcagtttggctgggcggcccagctctaggaagagtcttggtggttccaaacttgttccatttaagaatgatggaggccactgtgttcttggggaccttcaacactacagattttttttggtatccttccccagatctgtgccttgacacaatcctgtttcatagctctatggacaattccttcaacctcatggcttggtgtttgctctgacatgcactgtcaactatgggaccttacatagacccGTGTGTGCTttgccaaatcatgtccaaacaattttaTTTACCAcaaatggactccaatcaaggtgttgaaacatcaaggatgatcaatggaaacaggctgcacctgagctcaatttcgagtctcatagcaaagggtctgaaaacggtctgttcattttttataaatgtgcaaaaatgaaaaaacttttcactttgtcattagggggtattgtgtgtagattgttattAATAAAttatttaatccgttttagaacaaggctgtaacgtaacaatttttaacaaaggggtctgaatacacacacacacacacacactcatggccaaaagttgagaatgacacaaatacacATTTCCAAAAAGTTTGCTTCTtcagtgtctagatatttttgtcagatgttactatggaatactgaagtataattacaagcatttcataagtgtcagaCCTTTATTGACtcttacatgaagttgatgcaaagagtcaatatttgcagtgttgacccttctttttaaattctgggccacatcctgactgatggcagcccattcttcagaaattgtgtttttttttgtccacccgcctcttgaggattgaccacaagttctcaaagtgattaaggtctggggagtttcctggccatggacacaAAATATCGATGTGTGGTTCCCCGAGCGACTtcgttatcacttttgccttatggcaaggtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttccaggatggttgggagaagttgctctcggaggatgtgttggtaccattctttattcatggctgtgttcttaggcaaaattgtgagtgagcccactcccttggctgagaagtaaccccacacatgaatggtctcaggatggtTTAcggttggcatgacacaggactgatggtagcgctcaccttgtcttctccggacaagcttttttccggatgccccaaacaatcggaaaggggattcatcagagaaaatgactttaccccagtcctcagcagtccaatccctgtaccttttgcagaatatcagtctgtccctgatgtttttcctggagggaagtggcttctttgctgcccttcttgacaccagtccatcctccaaaagtcttcacctcactgtgcgtgcagatgcactcacacctgcctgctgccattcctgagcaagctctgtactggtggtgccccgagcccgcagctgaatcaactttatgagacagtcctggcgcttgctggactttcttgggtgccctgaagccttctgcAGAAATGCAGTGGAATTTTTTTGGAAGGGATTTAcatggcaaatagggactttgcaattaattgcaattcatctgatcactcttcataacattctgaagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattaatatttgtcattctcaaaacttttggcca

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU604645 True 2969 lncRNA 0.44 2 64504106 64507098

Neighbor

gene id symbol gene type direction distance location
LOC110526337 LOC106587231 coding upstream 4485 64494819 ~ 64499621 (+)
insyn1 LOC106587233 coding upstream 226351 64218174 ~ 64277755 (+)
LOC110526331 LOC106587235 coding upstream 471814 64026685 ~ 64032292 (+)
LOC110526326 eif3j coding upstream 741219 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 746868 63730434 ~ 63757238 (+)
LOC110526343 LOC106587228 coding downstream 245931 64753029 ~ 64765798 (+)
LOC110526344 LOC106587225 coding downstream 262001 64769099 ~ 64781704 (+)
chrna5 LOC106587222 coding downstream 325526 64832624 ~ 64851098 (+)
LOC110526346 NA coding downstream 347878 64854976 ~ 64858185 (+)
LOC118936302 NA coding downstream 374624 64881722 ~ 64884136 (+)
G533907 NA non-coding upstream 87277 64415718 ~ 64416829 (+)
G533903 NA non-coding upstream 88671 64415108 ~ 64415435 (+)
G533898 NA non-coding upstream 97245 64404930 ~ 64406861 (+)
G533889 NA non-coding upstream 110631 64393161 ~ 64393475 (+)
G533864 NA non-coding upstream 150984 64352890 ~ 64353122 (+)
G533991 NA non-coding downstream 46766 64553864 ~ 64573072 (+)
G534128 NA non-coding downstream 250732 64757830 ~ 64758115 (+)
G534130 NA non-coding downstream 253136 64760234 ~ 64760505 (+)
G534445 NA non-coding downstream 266549 64773647 ~ 64774014 (+)
G532489 NA other upstream 1160351 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1164608 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1305372 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1489120 63005672 ~ 63068991 (+)
G532259 NA other upstream 1681490 62820420 ~ 62822616 (+)
G534453 NA other downstream 283224 64790322 ~ 64847104 (+)
G534653 NA other downstream 606182 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 649411 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1340525 65847623 ~ 65849441 (+)

Expression


Co-expression Network