G534307


Basic Information

Item Value
gene id G534307
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64507401 ~ 64508525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU605016
caccctttgccttgacagctttgcacactcttggcattctctcaaccagcttcatgaggaatgctttttcaacagtcttgaaggagttcccacatatgctgagcacttgttggatgcttttccttcactctgtggtccaactcaaaccatctcaattgggctgaGGTCAGGTGATTCAGTacgccatcactctccttattggtcaagtagtccttacacagcctgtaggtgtgttttaggtcattgtcctgttgaataacAAATTATTGTCCCACTAAGTGAAAAGCAGAAaccatatcgctgcagaatgttgtggtagccatgcttgttaagtgtgccttgaattctaaataaatcacagacagggtcaccagcaaagcatcacacatcctcctccatgcttcacggtgggatccacacatgtggagatcatccattcacctactctgggtTTCTCAAAGAGACagctgttggaaccaaaagtctcaaatttggactcatcaaaccaaaggacagatttctaccggtctaatgtccattgctcgtgtttcttgacccaagcaagtctattcttcttatttgtgtcctttagtagtggttactttgcagcaattcgaccatgagggcctgattcacacagtctcatctgaacagttgatgttgagttgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatctgatgtgcagttaactctaatgaatttatccactgcagcagaggtaactctggtctttcattcctgtggcggtcctcatgagaaccagtttaatcatagagcttgatggttgttgcgactgcacttgaagaaactttcaaagttcttgaaaagttctgcattgactgaccttcatgtcataaagtaataatggactgtcatttctctttgcttatttgagatgttcttgccataatatggaccctatttggtgaaagaccatcttctgtataccacccctaccttgtcacaacacaactgattggctcaaacgcattaagaaggaaagaaattccacaaattaagttTTAACAAGGCagacctattaattgaaatgcattccaggtgactacttcatgaagctggttgagag

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU605016 True 1125 lncRNA 0.42 1 64507401 64508525

Neighbor

gene id symbol gene type direction distance location
LOC110526336 LOC106562141 coding downstream 14536 64417864 ~ 64492865 (-)
LOC110526332 LOC106562143 coding downstream 422514 64049445 ~ 64084887 (-)
igdcc4 LOC106587237 coding downstream 493997 63953033 ~ 64013404 (-)
igdcc3 LOC106562146 coding downstream 562471 63823887 ~ 63944930 (-)
cilp LOC106587239 coding downstream 734336 63764660 ~ 63773065 (-)
LOC110526338 LOC106587230 coding upstream 1218 64509743 ~ 64642634 (-)
LOC110526341 LOC106562136 coding upstream 188679 64697204 ~ 64715114 (-)
LOC118965085 LOC106587172 coding upstream 388910 64897435 ~ 64898548 (-)
LOC110526350 LOC106562128 coding upstream 449690 64958215 ~ 64973767 (-)
LOC110526352 LOC106587214 coding upstream 604753 65113278 ~ 65133825 (-)
G534252 NA non-coding downstream 105846 64401318 ~ 64401555 (-)
G534223 NA non-coding downstream 151205 64355978 ~ 64356196 (-)
G534133 NA non-coding downstream 276240 64219575 ~ 64231161 (-)
G534132 NA non-coding downstream 289273 64217619 ~ 64218128 (-)
G533746 NA non-coding downstream 324686 64182374 ~ 64182715 (-)
G534329 NA non-coding upstream 36094 64544619 ~ 64545125 (-)
G534345 NA non-coding upstream 62982 64571507 ~ 64571902 (-)
G534360 NA non-coding upstream 117826 64626351 ~ 64676020 (-)
G534430 NA non-coding upstream 249397 64757922 ~ 64758123 (-)
G534431 NA non-coding upstream 249981 64758506 ~ 64758731 (-)
G534201 NA other downstream 7787 64498453 ~ 64499614 (-)
LOC110526310 LOC106587159 other downstream 1517123 62985486 ~ 62991995 (-)
G532766 NA other downstream 1652394 62822905 ~ 62855007 (-)
G532763 NA other downstream 1654584 62851696 ~ 62852817 (-)
G534349 NA other upstream 70273 64578798 ~ 64614796 (-)
G534603 NA other upstream 346970 64855495 ~ 64895099 (-)
LOC110526365 LOC106587205 other upstream 1115464 65600097 ~ 65765382 (-)
G536183 NA other upstream 1753961 66262486 ~ 66276289 (-)
LOC110526379 LOC106587193 other upstream 1768677 66277162 ~ 66326558 (-)

Expression


Co-expression Network