G534509


Basic Information

Item Value
gene id G534509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64956530 ~ 64957769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU605234
CCCTGGGGGTTAGCCTAGCAATAACCAAGTGATGAGACACATAGCCCTCTACATTTAAATGTTTATGGTACACTCAGACAGGTGTCTGCGTCACAAAACAGTCAGTAACCACTCACAGAGGCTCACACAACTTGCATTTCTATAACCTTGGCCCCACCAGTGTTCACTATTCATGGAGGAAGACCACAGGACCACAAAGATTAGGTTCCTCCCCCACACAaaaccttttctttctctctgttagaGTGGAATGCTTATGGAGTGTTTGGAGTGCTGTGACATGTCAGTACTACAACTTGCTGCacagtttggaggaagaaggctACCTTGACCTGTCGAATTCTATCCACCTCTTCTGTGCGGGATATGTGTTCCTACCGTCTGCGGGCAGATCTGCACCATTTCACAGAGAGTTGGAATAATCACCCTTTAAGTCCATAGCATAAAGAactctgtagccacttagtgtgAACACCAGgtaagactacacacacacagttatatcaGCTATGTTGGTGAACCCCTCctgcatctgaactggctgacacagagggaacagcatgatcataggtgagaggtcacttggtcggGACAaaaggaagtattattaaagagatgctttacattgaaatacagatagagatgtagtagtcccagagttaatgatccaaggtcagttttgcatttcacctcctgatgattatgatgactgaccgtgttagaataaaaaaaacaaagcttaatcatgctctctttctatctatcggtctctcgtctgcaggtatgttttgatgtaagagaggaagccagtcccgtcatcgccacctcacccgctcttaagataaccttcgggccgactgggagcccaaggctggttaggagataCCACTAGAGACAcgatgtaattgtgatgaactgagagaatattagggtaacACTGcaattcattaatcatatgctgtcttccctgctcctctgttttacctctttccttttctgtcttctacacctctctccccacctcctcttggTTCCTCTTTTTTAAAATGCACACCAtttgtgcattgaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106580245

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU605234 True 1069 lncRNA 0.45 2 64956530 64957769

Neighbor

gene id symbol gene type direction distance location
LOC110526348 NA coding upstream 61415 64891686 ~ 64895115 (+)
LOC118936302 NA coding upstream 72394 64881722 ~ 64884136 (+)
LOC110526346 NA coding upstream 98345 64854976 ~ 64858185 (+)
chrna5 LOC106587222 coding upstream 105432 64832624 ~ 64851098 (+)
LOC110526344 LOC106587225 coding upstream 174826 64769099 ~ 64781704 (+)
LOC110526353 dhdh coding downstream 145455 65103224 ~ 65106320 (+)
dhdh.2 LOC106587215 coding downstream 148940 65106709 ~ 65113071 (+)
LOC110526356 LOC106587213 coding downstream 182111 65065380 ~ 65178884 (+)
LOC110526357 LOC106587212 coding downstream 235890 65193659 ~ 65368577 (+)
LOC110526358 LOC106587209 coding downstream 445839 65403608 ~ 65407275 (+)
G534449 NA non-coding upstream 151667 64785620 ~ 64804863 (+)
G534445 NA non-coding upstream 182516 64773647 ~ 64774014 (+)
LOC110526343 LOC106587228 non-coding upstream 190852 64753029 ~ 64765798 (+)
G534130 NA non-coding upstream 196025 64760234 ~ 64760505 (+)
G534510 NA non-coding downstream 4670 64962439 ~ 64964242 (+)
G534530 NA non-coding downstream 6533 64964302 ~ 64964542 (+)
G534532 NA non-coding downstream 10028 64967797 ~ 64968004 (+)
G534653 NA non-coding downstream 155511 65113280 ~ 65169563 (+)
G534453 NA other upstream 109426 64790322 ~ 64847104 (+)
G532489 NA other upstream 1612775 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1617032 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1757796 63032931 ~ 63198734 (+)
G535150 LOC106587155 other downstream 889854 65847623 ~ 65849441 (+)
G536406 NA other downstream 1645016 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 2055451 67013220 ~ 67018653 (+)

Expression


Co-expression Network