G534530


Basic Information

Item Value
gene id G534530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64964302 ~ 64964542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU605255
acatcggcTAACTATAATCTCCCAAGTCAATTAAGTGTTAATTATTCCATTGGGCTACTCTACACTTCAGTAGTGGCGGGGAATAACTACAACCCCATGAAGTGTATGTTACATTCAAGCTCAGTGGGTGAGAGCAGTAACTCCTGAATGTTAAATAACTGCTACTCATTCAGTTCGCGCGATTGTCAAACTCCATCAAGTGAATCATCACCCTCAGCATTCATCAGTCATCTATCTAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU605255 True 241 lncRNA 0.41 1 64964302 64964542

Neighbor

gene id symbol gene type direction distance location
LOC110526349 LOC106587217 coding upstream 2155 64899801 ~ 64962147 (+)
LOC110526348 NA coding upstream 69187 64891686 ~ 64895115 (+)
LOC118936302 NA coding upstream 80166 64881722 ~ 64884136 (+)
LOC110526346 NA coding upstream 106117 64854976 ~ 64858185 (+)
chrna5 LOC106587222 coding upstream 113204 64832624 ~ 64851098 (+)
LOC110526353 dhdh coding downstream 138682 65103224 ~ 65106320 (+)
dhdh.2 LOC106587215 coding downstream 142167 65106709 ~ 65113071 (+)
LOC110526356 LOC106587213 coding downstream 175338 65065380 ~ 65178884 (+)
LOC110526357 LOC106587212 coding downstream 229117 65193659 ~ 65368577 (+)
LOC110526358 LOC106587209 coding downstream 439066 65403608 ~ 65407275 (+)
G534510 NA non-coding upstream 60 64962439 ~ 64964242 (+)
G534509 NA non-coding upstream 6533 64956530 ~ 64957769 (+)
G534449 NA non-coding upstream 159439 64785620 ~ 64804863 (+)
LOC110526344 LOC106587225 non-coding upstream 186120 64769099 ~ 64781704 (+)
G534445 NA non-coding upstream 190288 64773647 ~ 64774014 (+)
G534532 NA non-coding downstream 3255 64967797 ~ 64968004 (+)
G534653 NA non-coding downstream 148738 65113280 ~ 65169563 (+)
G534764 NA non-coding downstream 208933 65173475 ~ 65173701 (+)
G534767 NA non-coding downstream 214921 65179463 ~ 65179673 (+)
G534453 NA other upstream 117198 64790322 ~ 64847104 (+)
G532489 NA other upstream 1620547 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1624804 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1765568 63032931 ~ 63198734 (+)
G535150 LOC106587155 other downstream 883081 65847623 ~ 65849441 (+)
G536406 NA other downstream 1638243 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 2048678 67013220 ~ 67018653 (+)

Expression


Co-expression Network