G535535


Basic Information

Item Value
gene id G535535
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65159200 ~ 65161324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU606374
AATTGTGCAAAATCTTTATTCATTCCTTTCATCATATCTTTCCATCGTCGTCACCATCATGAACACACCACTGACAGAGAGGGACAAGAACAGATAGGGATCTGAATACAGTCACTCTTAATGGGGGGACAATAGGTATCAGCTGTCAACGAGCCCTACACACCGCAGCCAGAAGGAGCACTGGATGGTGAAGGCTGGGTAAGGTGTTTCCCCCAGTCTtttcatctctacaaacaataaTTGACATGTGCAGATAGAGCCATTTCTCTCCCAACAGTACATTTCTTCTTCTCTGGTCCATATTCACATTTACAATGTTCAACACCAACGCCACTATGCATGTATGTCCGAGTGAAGACATTTTACCATTAGGGACATTTAGTTATTTTGTTCACTTTTACTCCAAATATAAATCTTTCGGTGGTTCCCTGTCTTTCTACACACTAGACAGGTAGACCTTGagacaggctgagagagagagagagagagagagagagagagagagagagagagagagagagaacatacatTTTATCTGGGCTAAGCAAATGTTGAATGAGTGCAATGTCCAGTATAATGTACTATAGTACAGAAAATACAAATAACCCACACATACATACAACTAATTGATAAACAGAGTAAATTATACACAGGGTTGCCGTTCCCCAAGGTAAACCATAAATATGTAAGTAAAGCACTTGAACAACATCCAGTGTCCTGTGGGTAGGGCCATAGCCATATAATATCTTCATGTATTATATCTCTCAGAGTAGGGAGGGATAGCGGGCTGTAGGGCATGGATTCACCTGGGGTCACTGCCCTAGTCTCTCAGAGTGGGATGGACTGTACTTTATGGAGCAAGTCACAAGTCAGTGCGACAGTGCTATGGGTTTTGCATCATGCTCTCTCAAATTCAGCAGTCTAGAGGGCACCAGTATTCTCTCTGTCATAATTTTGACTCTCCGGTCTAATTTCCCTAAATGAAACATCAGGAGAAGACAAGAAAGCCTTTAGTCTACAGAGGGAGCAGGCTgtggctgtgtctgtctgtgactagTCTCTCCTGACAGACTGGTAACAACATTAACTAGTGATGGATTTGTCCTGTGTAACATACAATCATTTTACTCAACCAGAGGACTTCAGGTCCCTCTGTCTGTGCTATCTGGAGACAAACTGACCCACTACATGACGAGGCACGGTAGAACACTGCTTTGACCCGGGAGATAATTGCATCTTGGCCCGTCAATTTATGTCATTAGTCAAAGAATAGGAAATAAACGGATCACTGAGAAAATGCCtacaacacaataaaataacacatttctaCATGCATGTAGATCCATGATTCAACACCCACAGGGGGGTGTAATAAACTAAACATgactccttcttcttcttcttctagaTATCCACAATGAGAACTGATGAATATAGATACACAGTCCAAAGGATTCTCACATTTGCAGCTGATAAAAGAGAGTGGATGAGACTTGACAGTGGCTCAGGAGGAAATGAGAGACCAGGGGCTgaaagggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgctcttgcgCTTCAGCTCAGAGTGTGTGTGGCAAACCAGTCCGGCTAAGGTTTCCTTCATTCATCCCTGTGTTTTCCAGCTCTATCTAGCCCACAGGTGTGGCTCACCGGAGCACAGAGTAGGAACTGTTACACATGCTAGCCAGACACAGGGAGAACGGAAAGCAGAGGAATAAAAAGTGAGGGGAAAAAAGGGAAAGGGATTGTAGATATGAGGCGTAAAGATCCTCAACCTCCCTCATCTGGTCTGAGTTTGTGTTTCCCAaatgtctgtctgtatttatgtCTATAGTTCTGTCTGTCGGTCTATCTGCAGTACAGACCTGTTCCTCCAAGGGCCACCGGGGAGCCTCCATTAGCTGGAGTAGATCTGGGTGCCGATCACACGCATTATCTCCTTCTGCACCTTGGGCTCCTGGGTGTTGATGTTGGCATCTCCCACCTGGCCATCCTC
>TU606375
AATTGTGCAAAATCTTTATTCATTCCTTTCATCATATCTTTCCATCGTCGTCACCATCATGAACACACCACTGACAGAGAGGGACAAGAACAGATAGGGATCTGAATACAGTCACTCTTAATGGGGGGACAATAGGTATCAGCTGTCAACGAGCCCTACACACCGCAGCCAGAAGGAGCACTGGATGGTGAAGGCTGGGTAAGGTGTTTCCCCCAGTCTtttcatctctacaaacaataaTTGACATGTGCAGATAGAGCCATTTCTCTCCCAACAGTACATTTCTTCTTCTCTGGTCCATATTCACATTTACAATGTTCAACACCAACGCCACTATGCATGTATGTCCGAGTGAAGACATTTTACCATTAGGGACATTTAGTTATTTTGTTCACTTTTACTCCAAATATAAATCTTTCGGTGGTTCCCTGTCTTTCTACACACTAGACAGGTAGACCTTGagacaggctgagagagagagagagagagagagagagagagagagagagagagagagagagaacatacatTTTATCTGGGCTAAGCAAATGTTGAATGAGTGCAATGTCCAGTATAATGTACTATAGTACAGAAAATACAAATAACCCACACATACATACAACTAATTGATAAACAGAGTAAATTATACACAGGGTTGCCGTTCCCCAAGGTAAACCATAAATATGTAAGTAAAGCACTTGAACAACATCCAGTGTCCTGTGGGTAGGGCCATAGCCATATAATATCTTCATGTATTATATCTCTCAGAGTAGGGAGGGATAGCGGGCTGTAGGGCATGGATTCACCTGGGGTCACTGCCCTAGTCTCTCAGAGTGGGATGGACTGTACTTTATGGAGCAAGTCACAAGTCAGTGCGACAGTGCTATGGGTTTTGCATCATGCTCTCTCAAATTCAGCAGTCTAGAGGGCACCAGTATTCTCTCTGTCATAATTTTGACTCTCCGGTCTAATTTCCCTAAATGAAACATCAGGAGAAGACAAGAAAGCCTTTAGTCTACAGAGGGAGCAGGCTgtggctgtgtctgtctgtgactagTCTCTCCTGACAGACTGGTAACAACATTAACTAGTGATGGATTTGTCCTGTGTAACATACAATCATTTTACTCAACCAGAGGACTTCAGGTCCCTCTGTCTGTGCTATCTGGAGACAAACTGACCCACTACATGACGAGGCACGGTAGAACACTGCTTTGACCCGGGAGATAATTGCATCTTGGCCCGTCAATTTATGTCATTAGTCAAAGAATAGGAAATAAACGGATCACTGAGAAAATGCCtacaacacaataaaataacacatttctaCATGCATGTAGATCCATGATTCAACACCCACAGGGGGGTGTAATAAACTAAACATgactccttcttcttcttcttctagaTATCCACAATGAGAACTGATGAATATAGATACACAGTCCAAAGGATTCTCACATTTGCAGCTGATAAAAGAGAGTGGATGAGACTTGACAGTGGCTCAGGAGGAAATGAGAGACCAGGGGCTgaaagggaagtgtgtgtgtgtgtgtgttagtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgctcttgcgCTTCAGCTCAGAGTGTGTGTGGCAAACCAGTCCGGCTAAGGTTTCCTTCATTCATCCCTGTGTTTTCCAGCTCTATCTAGCCCACAGGTGTGGCTCACCGGAGCACAGAGTAGGAACTGTTACACATGCTAGCCAGACACAGGGAGAACGGAAAGCAGAGGAATAAAAAGTGAGGGGAAAAAAGGGAAAGGGATTGTAGATATGAGGCGTAAAGATCCTCAACCTCCCTCATCTGGTCTGAGTTTGTGTTTCCCAaatgtctgtctgtatttatgtCTATAGTTCTGTCTGTCGGTCTATCTGCAGTACAGACCTGTTCCTCCAAGGGCCACCGGGGAGCCTCCATTAGCTGGAGTAGATCTGGGTGCCGATCACACGCATTATCTCCTTCTGCACCTTGGGCTCCTGGGTGTTGATGTTGGCATCTCCCACCTGGCCATCCTC
>TU606376
AATTGTGCAAAATCTTTATTCATTCCTTTCATCATATCTTTCCATCGTCGTCACCATCATGAACACACCACTGACAGAGAGGGACAAGAACAGATAGGGATCTGAATACAGTCACTCTTAATGGGGGGACAATAGGTATCAGCTGTCAACGAGCCCTACACACCGCAGCCAGAAGGAGCACTGGATGGTGAAGGCTGGGTAAGGTGTTTCCCCCAGTCTtttcatctctacaaacaataaTTGACATGTGCAGATAGAGCCATTTCTCTCCCAACAGTACATTTCTTCTTCTCTGGTCCATATTCACATTTACAATGTTCAACACCAACGCCACTATGCATGTATGTCCGAGTGAAGACATTTTACCATTAGGGACATTTAGTTATTTTGTTCACTTTTACTCCAAATATAAATCTTTCGGTGGTTCCCTGTCTTTCTACACACTAGACAGGTAGACCTTGagacaggctgagagagagagagagagagagagagagagagagagagagagagagagagagaacatacatTTTATCTGGGCTAAGCAAATGTTGAATGAGTGCAATGTCCAGTATAATGTACTATAGTACAGAAAATACAAATAACCCACACATACATACAACTAATTGATAAACAGAGTAAATTATACACAGGGTTGCCGTTCCCCAAGGTAAACCATAAATATGTAAGTAAAGCACTTGAACAACATCCAGTGTCCTGTGGGTAGGGCCATAGCCATATAATATCTTCATGTATTATATCTCTCAGAGTAGGGAGGGATAGCGGGCTGTAGGGCATGGATTCACCTGGGGTCACTGCCCTAGTCTCTCAGAGTGGGATGGACTGTACTTTATGGAGCAAGTCACAAGTCAGTGCGACAGTGCTATGGGTTTTGCATCATGCTCTCTCAAATTCAGCAGTCTAGAGGGCACCAGTATTCTCTCTGTCATAATTTTGACTCTCCGGTCTAATTTCCCTAAATGAAACATCAGGAGAAGACAAGAAAGCCTTTAGTCTACAGAGGGAGCAGGCTgtggctgtgtctgtctgtgactagTCTCTCCTGACAGACTGGTAACAACATTAACTAGTGATGGATTTGTCCTGTGTAACATACAATCATTTTACTCAACCAGAGGACTTCAGGTCCCTCTGTCTGTGCTATCTGGAGACAAACTGACCCACTACATGACGAGGCACGGTAGAACACTGCTTTGACCCGGGAGATAATTGCATCTTGGCCCGTCAATTTATGTCATTAGTCAAAGAATAGGAAATAAACGGATCACTGAGAAAATGCCtacaacacaataaaataacacatttctaCATGCATGTAGATCCATGATTCAACACCCACAGGGGGGTGTAATAAACTAAACATgactccttcttcttcttcttctagaTATCCACAATGAGAACTGATGAATATAGATACACAGTCCAAAGGATTCTCACATTTGCAGCTGATAAAAGAGAGTGGATGAGACTTGACAGTGGCTCAGGAGGAAATGAGAGACCAGGGGCTgaaagggaagtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgctcttgcgCTTCAGCTCAGAGTGTGTGTGGCAAACCAGTCCGGCTAAGGTTTCCTTCATTCATCCCTGTGTTTTCCAGCTCTATCTAGCCCACAGGTGTGGCTCACCGGAGCACAGAGTAGGAACTGTTACACATGCTAGCCAGACACAGGGAGAACGGAAAGCAGAGGAATAAAAAGTGAGGGGAAAAAAGGGAAAGGGATTGTAGATATGAGGCGTAAAGATCCTCAACCTCCCTCATCTGGTCTGAGTTTGTGTTTCCCAaatgtctgtctgtatttatgtCTATAGTTCTGTCTGTCGGTCTATCTGCAGTACAGACCTGTTCCTCCAAGGGCCACCGGGGAGCCTCCATTAGCTGGAGTAGATCTGGGTGCCGATCACACGCATTATCTCCTTCTGCACCTTGGGCTCCTGGGTGTTGATGTTGGCATCTCCCACCTGGCCATCCTC
>TU606377
AATTGTGCAAAATCTTTATTCATTCCTTTCATCATATCTTTCCATCGTCGTCACCATCATGAACACACCACTGACAGAGAGGGACAAGAACAGATAGGGATCTGAATACAGTCACTCTTAATGGGGGGACAATAGGTATCAGCTGTCAACGAGCCCTACACACCGCAGCCAGAAGGAGCACTGGATGGTGAAGGCTGGGTAAGGTGTTTCCCCCAGTCTtttcatctctacaaacaataaTTGACATGTGCAGATAGAGCCATTTCTCTCCCAACAGTACATTTCTTCTTCTCTGGTCCATATTCACATTTACAATGTTCAACACCAACGCCACTATGCATGTATGTCCGAGTGAAGACATTTTACCATTAGGGACATTTAGTTATTTTGTTCACTTTTACTCCAAATATAAATCTTTCGGTGGTTCCCTGTCTTTCTACACACTAGACAGGTAGACCTTGagacaggctgagagagagagagagagagagagagagagagagagagagagagagagagagagaacatacatTTTATCTGGGCTAAGCAAATGTTGAATGAGTGCAATGTCCAGTATAATGTACTATAGTACAGAAAATACAAATAACCCACACATACATACAACTAATTGATAAACAGAGTAAATTATACACAGGGTTGCCGTTCCCCAAGGTAAACCATAAATATGTAAGTAAAGCACTTGAACAACATCCAGTGTCCTGTGGGTAGGGCCATAGCCATATAATATCTTCATGTATTATATCTCTCAGAGTAGGGAGGGATAGCGGGCTGTAGGGCATGGATTCACCTGGGGTCACTGCCCTAGTCTCTCAGAGTGGGATGGACTGTACTTTATGGAGCAAGTCACAAGTCAGTGCGACAGTGCTATGGGTTTTGCATCATGCTCTCTCAAATTCAGCAGTCTAGAGGGCACCAGTATTCTCTCTGTCATAATTTTGACTCTCCGGTCTAATTTCCCTAAATGAAACATCAGGAGAAGACAAGAAAGCCTTTAGTCTACAGAGGGAGCAGGCTgtggctgtgtctgtctgtgactagTCTCTCCTGACAGACTGGTAACAACATTAACTAGTGATGGATTTGTCCTGTGTAACATACAATCATTTTACTCAACCAGAGGACTTCAGGTCCCTCTGTCTGTGCTATCTGGAGACAAACTGACCCACTACATGACGAGGCACGGTAGAACACTGCTTTGACCCGGGAGATAATTGCATCTTGGCCCGTCAATTTATGTCATTAGTCAAAGAATAGGAAATAAACGGATCACTGAGAAAATGCCtacaacacaataaaataacacatttctaCATGCATGTAGATCCATGATTCAACACCCACAGGGGGGTGTAATAAACTAAACATgactccttcttcttcttcttctagaTATCCACAATGAGAACTGATGAATATAGATACACAGTCCAAAGGATTCTCACATTTGCAGCTGATAAAAGAGAGTGGATGAGACTTGACAGTGGCTCAGGAGGAAATGAGAGACCAGGGGCTgaaagggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgctcttgcgCTTCAGCTCAGAGTGTGTGTGGCAAACCAGTCCGGCTAAGGTTTCCTTCATTCATCCCTGTGTTTTCCAGCTCTATCTAGCCCACAGGTGTGGCTCACCGGAGCACAGAGTAGGAACTGTTACACATGCTAGCCAGACACAGGGAGAACGGAAAGCAGAGGAATAAAAAGTGAGGGGAAAAAAGGGAAAGGGATTGTAGATATGAGGCGTAAAGATCCTCAACCTCCCTCATCTGGTCTGAGTTTGTGTTTCCCAaatgtctgtctgtatttatgtCTATAGTTCTGTCTGTCGGTCTATCTGCAGTACAGACCTGTTCCTCCAAGGGCCACCGGGGAGCCTCCATTAGCTGGAGTAGATCTGGGTGCCGATCACACGCATTATCTCCTTCTGCACCTTGGGCTCCTGGGTGTTGATGTTGGCATCTCCCACCTGGCCATCCTC
>TU606378
AATTGTGCAAAATCTTTATTCATTCCTTTCATCATATCTTTCCATCGTCGTCACCATCATGAACACACCACTGACAGAGAGGGACAAGAACAGATAGGGATCTGAATACAGTCACTCTTAATGGGGGGACAATAGGTATCAGCTGTCAACGAGCCCTACACACCGCAGCCAGAAGGAGCACTGGATGGTGAAGGCTGGGTAAGGTGTTTCCCCCAGTCTtttcatctctacaaacaataaTTGACATGTGCAGATAGAGCCATTTCTCTCCCAACAGTACATTTCTTCTTCTCTGGTCCATATTCACATTTACAATGTTCAACACCAACGCCACTATGCATGTATGTCCGAGTGAAGACATTTTACCATTAGGGACATTTAGTTATTTTGTTCACTTTTACTCCAAATATAAATCTTTCGGTGGTTCCCTGTCTTTCTACACACTAGACAGGTAGACCTTGagacaggctgagagagagagagagagagagagagagagagagagagagagagagagagaacatacatTTTATCTGGGCTAAGCAAATGTTGAATGAGTGCAATGTCCAGTATAATGTACTATAGTACAGAAAATACAAATAACCCACACATACATACAACTAATTGATAAACAGAGTAAATTATACACAGGGTTGCCGTTCCCCAAGGTAAACCATAAATATGTAAGTAAAGCACTTGAACAACATCCAGTGTCCTGTGGGTAGGGCCATAGCCATATAATATCTTCATGTATTATATCTCTCAGAGTAGGGAGGGATAGCGGGCTGTAGGGCATGGATTCACCTGGGGTCACTGCCCTAGTCTCTCAGAGTGGGATGGACTGTACTTTATGGAGCAAGTCACAAGTCAGTGCGACAGTGCTATGGGTTTTGCATCATGCTCTCTCAAATTCAGCAGTCTAGAGGGCACCAGTATTCTCTCTGTCATAATTTTGACTCTCCGGTCTAATTTCCCTAAATGAAACATCAGGAGAAGACAAGAAAGCCTTTAGTCTACAGAGGGAGCAGGCTgtggctgtgtctgtctgtgactagTCTCTCCTGACAGACTGGTAACAACATTAACTAGTGATGGATTTGTCCTGTGTAACATACAATCATTTTACTCAACCAGAGGACTTCAGGTCCCTCTGTCTGTGCTATCTGGAGACAAACTGACCCACTACATGACGAGGCACGGTAGAACACTGCTTTGACCCGGGAGATAATTGCATCTTGGCCCGTCAATTTATGTCATTAGTCAAAGAATAGGAAATAAACGGATCACTGAGAAAATGCCtacaacacaataaaataacacatttctaCATGCATGTAGATCCATGATTCAACACCCACAGGGGGGTGTAATAAACTAAACATgactccttcttcttcttcttctagaTATCCACAATGAGAACTGATGAATATAGATACACAGTCCAAAGGATTCTCACATTTGCAGCTGATAAAAGAGAGTGGATGAGACTTGACAGTGGCTCAGGAGGAAATGAGAGACCAGGGGCTgaaagggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgctcttgcgCTTCAGCTCAGAGTGTGTGTGGCAAACCAGTCCGGCTAAGGTTTCCTTCATTCATCCCTGTGTTTTCCAGCTCTATCTAGCCCACAGGTGTGGCTCACCGGAGCACAGAGTAGGAACTGTTACACATGCTAGCCAGACACAGGGAGAACGGAAAGCAGAGGAATAAAAAGTGAGGGGAAAAAAGGGAAAGGGATTGTAGATATGAGGCGTAAAGATCCTCAACCTCCCTCATCTGGTCTGAGTTTGTGTTTCCCAaatgtctgtctgtatttatgtCTATAGTTCTGTCTGTCGGTCTATCTGCAGTACAGACCTGTTCCTCCAAGGGCCACCGGGGAGCCTCCATTAGCTGGAGTAGATCTGGGTGCCGATCACACGCATTATCTCCTTCTGCACCTTGGGCTCCTGGGTGTTGATGTTGGCATCTCCCACCTGGCCATCCTC

Function

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU606374 False 2045 lncRNA 0.45 3 65159200 65161324
TU606375 False 2067 lncRNA 0.45 2 65159200 65161324
TU606376 False 2043 lncRNA 0.45 3 65159200 65161324
TU606377 False 2047 lncRNA 0.45 3 65159200 65161324
TU606378 True 2043 lncRNA 0.45 3 65159200 65161324

Neighbor

gene id symbol gene type direction distance location
LOC110526352 LOC106587214 coding downstream 25375 65113278 ~ 65133825 (-)
LOC110526350 LOC106562128 coding downstream 185433 64958215 ~ 64973767 (-)
LOC118965085 LOC106587172 coding downstream 260652 64897435 ~ 64898548 (-)
LOC110526341 LOC106562136 coding downstream 444086 64697204 ~ 64715114 (-)
LOC110526338 LOC106587230 coding downstream 516566 64509743 ~ 64642634 (-)
LOC110526361 LOC106587207 coding upstream 364348 65525672 ~ 65546448 (-)
LOC110526365 LOC106587205 coding upstream 438773 65600097 ~ 65765382 (-)
LOC110526369 xlkd1 coding upstream 631495 65792819 ~ 65795668 (-)
LOC110526367 LOC106587202 coding upstream 636749 65798073 ~ 65820337 (-)
LOC110526945 LOC106562099 coding upstream 665605 65826929 ~ 65828077 (-)
G535528 NA non-coding downstream 17314 65139909 ~ 65141886 (-)
G535431 LOC106562126 non-coding downstream 178886 64980010 ~ 64980314 (-)
G534652 NA non-coding downstream 180757 64978138 ~ 64978443 (-)
G534651 NA non-coding downstream 181074 64977827 ~ 64978126 (-)
G534626 NA non-coding downstream 204240 64953520 ~ 64954960 (-)
G535545 NA non-coding upstream 21948 65183272 ~ 65183574 (-)
G535546 NA non-coding upstream 23219 65184543 ~ 65185214 (-)
G535600 NA non-coding upstream 128801 65290125 ~ 65337622 (-)
G535619 NA non-coding upstream 144075 65305399 ~ 65307541 (-)
G535603 NA non-coding upstream 199681 65361005 ~ 65368565 (-)
G534603 NA other downstream 273668 64855495 ~ 64895099 (-)
G534349 NA other downstream 544404 64578798 ~ 64614796 (-)
G534201 NA other downstream 659586 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 1333675 63823887 ~ 63944930 (-)
LOC110526310 LOC106587159 other downstream 2168922 62985486 ~ 62991995 (-)
G536183 NA other upstream 1101162 66262486 ~ 66276289 (-)
LOC110526379 LOC106587193 other upstream 1115878 66277162 ~ 66326558 (-)
LOC110526387 LOC106587187 other upstream 1339064 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 1388043 66549367 ~ 66549974 (-)

Expression


Co-expression Network