G535603


Basic Information

Item Value
gene id G535603
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65361005 ~ 65368565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU606447
AGGACTGTGCTTTATTTTAGTCTAAGCAGAATATAATGAACTAGAGAACTACAGTTCAGGAGCACTATGGGAGGAACCACCCCGAATTAGGGAAAAACAGACCCGTGCCAACACTAAGTCAAATTACAGTTCTGTTTTGAGAAAATAAAGATAATAAACTGATTTTGTTCAAGTAAAAATGAGAAAGATGTACAATTATATCATTCAACTAAAATATTATAAATAAATGAACTAATAAGTGCCTAAAATAAATTATGATAAATGACATAAAATGACATGTTTTATTTGTCTGACAGAAGTAAAATCAAGTGGATGAAATGCGAGAGAGAAGCTGGGAATGTAATGTCTCATGAAGCAAAGTACAGTGGATGATTTTCACTTTCCTTTATATCTGAATGGTTGCACAAAGGCTCTCATTTCATGTTTTGTTAGGGAAACTCTGCTCTATTGGTTTCATGTGATAAAATTTGGTCCATGTAACCGATGGAAATGTAACTATACTGTATGATCCCGTCCttattggtgtcagaagtgggattgagGCAAAACTGACACAAGGCAATCTTTACAACTGACAgctgcatttcaattaaacagaATCTCATCTCTGCAAGGAAAAACCAGAGCATGTTTATGAACAATGGAAAAGAACTAGCATTGGCATCCCCAGAATACAATGTATGTGCTACGTTTTTGAAGGTAGTACCGTCAGAGAGAATGAATGTGTTTTAAGGCAGACTTCCCTCTTTTGATCAGTTTGGTGTCAAGGCCACAGGGTTGACCTGACTTGACCAAAACAGTGTAGTGGAACGTTCAATCTGTTATTGGCACATTTTCTTCAGTGGTGTTGGAGTCAACCACAGTTATTATATATACAAGATGGACCAGTAATGTTGAAATAGCTCTTCAGAAATGATCTCTGAGAGAAAATTCCCGCATGCAGACAAGATGAAAATAAAAGAGATGTCACTGATTCTTTTTCAAGACATAAAATGAATTCAAGATGAAAGAAATAATCAAACAAAAGAGAAATGTATGGCTGAAAGACAATGGTCATGTTAAATGACAGCTTATTTTTCAAAATTTACATGTAATTCCATATGGGGATTGTGTAGCAAAATGTCCCTTCAACATGTATCTTCAAAGCATATCAGAATAAACCTTGAGACAATGGGTCCATCCCAGCTTCAGCAGAtaacaaaacagaaaacataaGAGAATGTAAAAAAAGAACCATTTTACCAACATGAATATAAAATCCATTTTAACATCAGCGCTTCAATATACAAGAAATAAAAATGTTTTCTCTCTACTGTTTTTGATAAATTATTTCATAGTTTCCTTCTCGTAGTCAGTGAAATATATTAactatttctttcttttttttcaacATGATTTATTGTACGGTCGTCTATAAAGAAGCCTTAACAGAATTAAAAAATAAGCTATGTAATATGTACAGGAGTATCGCAGGCAGCTGTGTACTCTGGCCGTGGAGAGAGCAGAGGCAGGGGCAGGCCACAGAGGCAGGGAGATCTGCAGGGTAGTCATTCATTCTAGTAGCAGTGCATCCGGCTCACCTGGCCcaatcctctctctttctcatcatacacctgtgttctgtgtttggaTCATATGGAAATGTGTTTTCAGCTCCAATCTGGCAAACCCTCACCCTCTTCCGCCCATACCCGTGGAGCTGTGGATTATAGCGGTGACTGGCGGACGCCGCCCCGGTGgcaagctagctagcaacttgcGAACTAATGGCTGCTGTCACTATCACCTGCTCCTCTGCACGGCACGGAgcagactgaggggcaggccttCTCGTCACGTATTTGAGGTCACATCTATCCGTCTAATCAGCTCCAATTGGACTAATCCAATTAGCTAGTGCACAGGCAATCTTTCAACTGTCAGAAATATCATGATGTGTCAGTGTAAACCTAATTAATGGATTGCTCCAGGCTGGAATTGAAGCCCTACTAAATCATCTAGAATCAGATCTCTGCTATCCTCTCCCTGTTATGTTGGGTGGTGTTCAGCTGAGGGTATAGTGCATATTCATTCATGTTTACTCAGTAACCAAAAAGGCCAAAGTGTTAAAAAGTCCCACCCTCTCCAAAGATTTCCTGCACTGCTGTGGATACGTTTTATAGTGACATCAATGTCCACACAGCCAGGCGACTACTATAGACAGACCTCTCTACTGTACAGTTCTTACTTCCTGACTCATTTGTTTCTGTGTTATATTATTTACATGAAGGAATAAAAAATTCTGTCTCCATTTTTTGATTTGAATCTCCAGCTTTGTTGTCAAACATGATCCCACACTTTTCTGTGATTGACTGCTCTTTATGTTGTTTATGATAGGATCAAGGTCTTCCTTTTAGTGTCTTTTAAAATTGCACGTTGACCTGATGGATCCAAGGCATTAATGTTTCAATGACAGACAACACTccccctgactgactgactgacagtgtgATCGTGTCTCTGGCTCCTCCAGCTGCCCTGGCAGAGGTCCAACATGCTCCTCCAGCTCCCACCATACTCTCAGTGCCTCTGGGTGAATACGCAGCTCTTATTCCTCCCCAGCCAGACAAGGCAGGCAGGGCCCATGGGAAGGCAAGGCTCTGAAAGTTTCCACTAATCATGACATCATAGTGCCTGATGCCCTGAGTATTGAGGTGACTTTGTGGAGTTTCAGTTTAGCATCCAGGCCCCCCCAAAACCCACTTCACTTCCCCTCTTAGCAAAAATCCCATTTCCACAGCGAAAATCCCTTTTTGCGTTAGCTAAGCGAGATGACGGAAAAGCTCTCCTTTTCTCCCAAAGCAGCTATTAAATGAGAGCCATTAATTTCTCCCTCCTGTCCAACAGGTTCCTTTAATTATCTCTCCACTTTCAGTCAATTACATTTCACTTCCTTTCCTTGACAATCACTGCTATTTTAGGGTGAGTGTTCTCTACACCCAGGGGCTGGGGTCTGCTAGACATGCTAGGCAGATCTCTCTTCGCCCACTAGGATTGGTTATTCAACCCATCCGCCAGCTTCAGAGCTCAGATGATTGGTTATCTAGCCTCTTAGCCTCTTAGTCAACCTCTTCAGCTCTTAGGACTGGTTATCCTTCCCCTCTGTCAGCCTCGGAGCTCTGAGGTTTCTAACTCCTCATGAGGACAGACTTTATGGAATGCAAACTAGGAAGGCATTATATCTAGAGCCAGTAGAGGAGGCAGAATAACCAGAGGTTAAGAAATGTGAATAACTGCCTCACAGGTGCTAATGTTACATGAGAAGGTCAGGCATTACAGTGACCACATGACCATAAATATGTTTTTGTTATAttatattttacatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagatataaactatgaattaacacatatagtaaaaataaagaaaggtGTATccgaacttttgactgttactgtatttcCAAACAGACTCATAAAGTGAGTCGAACTAACAATAGCAATAACCTATAATGTCAATCTAAATATTCTCATCTTAACATGAGTGGGTGGCTTTCAGTCCTGCGTAAGGCGAGTCACTCCTAAGTTAACATTCTTGACTAAAGGCCAGACAGGGCCAGAGCTGCGCTAAGATGGGCTGAGATGGGCTGAGCTGGGCTGAGATGGGCTGAGATGGGCTGAGCTGGGCTGAGATGGGCTGAGATGGGCTGAGATGGGCTGAGCTGGGCTGAGATGGGCTGAGATGGGCTGAGCTGGCAGACTTCTGGAGTCAGTAAGAGAAGGAATAAAACCCACTTCTCATTTTCTTTGTTCCAGAGCCTGGCTTCGCTACAGCTATttctgttttcactgcatgtcaCACTAATAACCTTCCTCCCCTGTGTGGAAGAGCAATAAGAGGACCCTGGTTCTAACAGCTCCCTGATTTAACATGGTCTAATCTAGCCTTCCCAAGCACGTTTCTGCAGCTCCCTGGTGCAGCAGAAAGGCTATACGAGCGTAGCACGTTAGCCAAGCAGGGAATATAAGACTGGGCAGGGGATTGGACCTAGGCTGAACCTAACCCTGCTCTAAGTTGACTGTAGGGGTGTGCAGCATATATCTGGTGTAGGAGCCATCAGAGGGCTCGTGGGGAGGCTAATGGGACTAGTCTTGCAGGAGTTGCTTTTGAAGCGGCAGAGAGACAAGCATAGGAGATTTCATCGCTCACGGAACATTAGGTTTCCTATTGATTAATTCAGCATTACGTAAATAAGGAGCACAACATGGCTGCTGTGAAGAACATGCATTGATATTGACCTACTTCACATTAACTCTTGTTGCTTCCTAGTTCCTACATGTTCTGCTGACTTCATAACAACTAAAGGCTGAGTGTTTTTACTGTGTTTTTGAAGGCAAGCTGAGACAACACACGACCAAAGCTGGCACTGTTTTTTTCAACGGGCGTCATTTTGATTCAAAATAACTACTGTGCTTCACCAATATTGTTCCTCCAGTTCTGAACAATATTCTGTGCTTTGCAGGTGTCCCGACTGTAATACTGCCGTGACAAATGCAAAATGTTTAGAGCAGGTTGTTTTGTGGACAATGGCGGCTTCTGAGGCGATTGTTGAGACAATTATGTGCTGAAAGCTGATGTACAATAACATGGGCCACCCGGCAGGCAGCTGCAACGGAGGAACTAAGGGTTTTTCAACGAACTAGTTGGTTGTCTGCTACCCATTTCAACCTGCTATTGTTCAGTAGCTTTTATACCTGGAGAAATATTTCAAACCTAGTCTATTTTGCCTAATTTTCAACATAATCTATACCCACGCCAATCAAATATCCAACATTAATAGCCAGAGTAGCTATGATATGGAGGGTTTTATCCATCTTCCTGGATCCCATCTCCATCATAAATACGGCTGCGGTGATATCGGTGCCAGGTCAGCTGTCGGCATCCTTGCCAGGGAGCCGCTACAAACATAATTCTCTCTAATCTACCTTCTGTCATCACAGAGCATTCAAGGGACCATCCCCACTGTAATTTGGTCCAGGTGATTATGCAGATGACTTTTCACTTGGTTGGTGTTAATGTATAGAGCCTCACTATTACAACGTGATTAGAGGGAAAGGTGAAATAGCATGTCTAATACGGAGGAAGAGATCATCGAAGGCGACTGAAGCCAAACACTGAACTGCAAGTTGGTCTGAAACATTGTTCCAGGGAAACAGCTGAACAGCATAGCCTGGTTGGGGTTCTGGAAGGCATGATGGAACAGAACAGTGTCTATTTATAGCAGAGGAACACAAACACAAAGTCAGAAGCTAACATTCATTACAGTAGTGTGGTATGGTGAAAGCAAGGATACAAATCAAGACAAATCCAAGATCTTTTCGCTCACAGAAAAGAGTGGCATGGTATTGTCTTTAAGCAGCTGGGAGAAAGACAACGAAAGTCATTGTACTGTAGATGTGTCTTGTGtgatgcaggcaggcagggctTTCAGTCAGTGACTTGGAATGCGTCCGCTCTGCTTTGGAGAGCAAGTCCCAGAGGTAAACAGAGACAGACTGGACAGAAGGCAGCAGGTACCTAATACATGCCAAGTGATTCCTTATCAACCCTTCAATCCCATTCCCAAAGAGCTAGGCAGCACAGATACATGGTGTTTGGCAAGGTGGTggtgttgaggggggggggggggggggggttgtggctTTTGATTGCATGGATTTGGTCCCCCGGGGGATAATTCCAAGGAGCATCACTTTGAAGGATAAGAAAAGACAAGGTTGGACATGTTGGTGTGGAGTAGGACTCAGAGATCAGGGTTCGGCTGTTGacttctcccactctcctctcgccttctcttccctgtccagctctgcctccccctctgtATGCCTTCAGTCAGCTCTCAGAgagttgggagggagggagggagggggagagctgGGGGAGAGCTGGTGTTCTACTGAGAGAACTTGAGGAAGTGTGGACAGTGAATGACTTGCAATCTTATCCTTCCTCGAGACTCAACGCAAACATATTGATCTGGTTTTCATATAGCGGGGCCAGCTGCATCCACCACAAAATAAACGGCTCATAGACACTAACTAAAAGCCTGGCAAGTTAAGAGTTCAGAGCTGTGATCTGCTAGGCATGGATTGGCAGGGAGGAGCTGAATGATGGCGGTTGTATGGCTGTAATTCAGACTGTGTTAGGTTAGGTTGAGACGGATAGGTAGGTTTTTCCACAGGCTCATTATATAATATTTGAAAAAAAAAGCAGGTCAGGGAGGGGACATGTTAACAGTGGCATGTACATTATATACGACACAGCTAAATGAGCTCTAAAAGCTTCCACTGTTTGGCCATCCATAAATCTTGTGTGTCTTTCAGAGCAAGTTCTGCTTGTATCTGTTCTGCAGCCGTGGGGGTGAGGCGATGTTTCTCAATCTCACCAGAGCTTCAGAACGGCTTCAGCGGACATAAAtatctctggcctctctctctctctctctctctctctctctctctctctctctctcgttctccctcttgCCTATAAAGTGGTTATTTTTAATGggtctatttttttattttactcaaACACCATGAGAGCCAATTCATTGTTATACTGTTGAGTCCACTCTTTTGGCAGGTTCAGTAGCTATCAACTCAATCATTTTCTTCTCTGCTTGCCTTAATTTTTGTCCATTAGTCCATCTCGTTTGCAGAAGCTTTTCTTTAAGCATTTCTTTAATACGTTTTATAATAGCACACTCCCTGTGTAATAAAAAAGCTCAAAAGAAAAGAACACACCATGTCCGATTTGCTTGGTTTTTACAGTGGATTGTCGCTTGAACACAAAGGCTTGTGGGAAATAAGCCTCTCATATGTGCACCCTGTCCAGCACAGACACTAGGAAGGTCCATCTGTCTTTTCTCTTCTTTTTCCCCCTCTTCTGAAAAACAGTTCCTTTATAGCTGTCAGATAGTGCTGTGAGTGAGTTGCACACCATGAAGAGGGACATATCCAGCGGCCTGACCGTCACATCCAAGAGAGAGACCCCAATGCCCCAAAGCCCACTGGGACGGGACAGACAAAATGAATAATTTTATCTTTTTCATCCCTCCCCTACTTTACAAGTTCAAgtatttttttcttaaaaaaaaaaaaacaacagcaaAAAAGAGCAAATCTACTTTTCTAGTATTCTACATTTTCTAATCTACTAACTGGGGGCAAAACAGCAACCAGAACATAATAATCAGCCCCTTTACTACGTTTCCTTGTCTTTTTTTCAATGTATAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU606447 True 7367 lncRNA 0.43 3 65361005 65368565

Neighbor

gene id symbol gene type direction distance location
LOC110526352 LOC106587214 coding downstream 227180 65113278 ~ 65133825 (-)
LOC110526350 LOC106562128 coding downstream 387238 64958215 ~ 64973767 (-)
LOC118965085 LOC106587172 coding downstream 462457 64897435 ~ 64898548 (-)
LOC110526341 LOC106562136 coding downstream 645891 64697204 ~ 64715114 (-)
LOC110526338 LOC106587230 coding downstream 718371 64509743 ~ 64642634 (-)
LOC110526361 LOC106587207 coding upstream 157107 65525672 ~ 65546448 (-)
LOC110526365 LOC106587205 coding upstream 231532 65600097 ~ 65765382 (-)
LOC110526369 xlkd1 coding upstream 424254 65792819 ~ 65795668 (-)
LOC110526367 LOC106587202 coding upstream 429508 65798073 ~ 65820337 (-)
LOC110526945 LOC106562099 coding upstream 458364 65826929 ~ 65828077 (-)
G535600 NA non-coding downstream 23383 65290125 ~ 65337622 (-)
G535619 NA non-coding downstream 53464 65305399 ~ 65307541 (-)
G535546 NA non-coding downstream 175791 65184543 ~ 65185214 (-)
G535545 NA non-coding downstream 177431 65183272 ~ 65183574 (-)
G535535 NA non-coding downstream 199681 65159200 ~ 65161324 (-)
G535653 NA non-coding upstream 4449 65373014 ~ 65373280 (-)
G535654 NA non-coding upstream 5960 65374525 ~ 65374778 (-)
G535663 NA non-coding upstream 23972 65392537 ~ 65392758 (-)
G535604 NA non-coding upstream 46008 65414573 ~ 65430407 (-)
G535683 NA non-coding upstream 55389 65423954 ~ 65436830 (-)
G534603 NA other downstream 475473 64855495 ~ 64895099 (-)
G534349 NA other downstream 746209 64578798 ~ 64614796 (-)
G534201 NA other downstream 861391 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 1535480 63823887 ~ 63944930 (-)
LOC110526310 LOC106587159 other downstream 2370727 62985486 ~ 62991995 (-)
G536183 NA other upstream 893921 66262486 ~ 66276289 (-)
LOC110526379 LOC106587193 other upstream 908637 66277162 ~ 66326558 (-)
LOC110526387 LOC106587187 other upstream 1131823 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 1180802 66549367 ~ 66549974 (-)

Expression


Co-expression Network