G535118


Basic Information

Item Value
gene id G535118
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65796034 ~ 65797422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU605925
AAAAAAAACGTATGAATACAGAATAAGCAAAAATCAAACAAGCTAGTCCTTAAGTTGTATTCTTTCAAGAGAGTACAGGAGGAGTGTTTGGCACAGATAGATGTTGGGCAAgttgtttatttttattgactttgGCACCTCACAGAATAATTCCCTCCCTCTGCCCATTGCTCAGTCATTAACAAGCTCATGATCCCTGGCATCCTCTGATGTGACTCTGACACACAGCGAAATCCCACTTCCAGCAAACACCTCACCCCAACCTAGTACAGCAGGAAATGACGCAGGCAGAACCGAAAAATAAGCAAAAGTAGTTGTTTGCTGTATGAGAAGAGTCAGTGACATTTAAACGTCCCCAAAAAATTGACATCTAAAGAGaacatttatattttattttgtgaCATTAATTTAATATTAAAATAGAGAGAATCACTCAAGCAGCCTTGACACACTGCAGCTACAGCTTAATGGAGCCAAGTAGATTACATAAGTGGTTTCCTGAGAGACATGAAAGGTTCAAAAGATCTTTCATTTTCATAAGTGCAGGGAGGAAGAGAACAAGCGCTGTGCTGAAAAATACAATTACTGTGTCACTCATTCCTCCAAGGAAACGACTGATTTGGGAGGTTAGCATGAGAACTCTGCCAACACACCTGTTTGCTTCATGGAAACtgcacctgtctgtctgacatACATTATTCACTATGGAAATGAATGCTGCGAGTTTTAAGGCACCTTTATTTCAAGGCGAAAATGACACAACAGAAAACCCTGGCACGCATGCGGGAAGAAGATTTCTCATGCTGTCTAAAAGTGCTCTCGTACATTAAGGAAATCTTTCAAGGCTCGGAGGATGCAAACCAACACAgtaacaacacaaacaaacaagaaccATCAGCTGCTAAATATTACACTTGAGGAACTACTTTGGAATGTGTTTATATTATAGATTTTCCAAAAAGTATCTGCTTAAATACCACAAATATAGATATTTTACTAaagataaaaacaaaacaaaaaaaacatatctatGTCCTTAAATATCGCTGTAAATCTCTTCAGGGGATGTCCTCTTACTGGACCTGAGAGAATGAACATAAAATAACAGAGTGGTAGATGAATGTACATTAGTTTAATGTCTACTGTGACATTTGTCTTAGGGAACTCATCAGGAATCTTCCATTTTCGCCCATGGGGCCACATTCAGTCCTCCAGGATGACATTCAGAGTAGGACCAGGAATAATAACAATACATTGTGAATACATACAGTGAggtccaaaagtatttggacaatgacaaatatatatttggggggggggggctctgtactccagcactttggatttgaaatgatacaatgactatgaagtGCAAACTGTCAGCTTTGG
>TU605926
GGCAAgttgtttatttttattgactttgGCACCTCACAGAATAATTCCCTCCCTCTGCCCATTGCTCAGTCATTAACAAGCTCATGATCCCTGGCATCCTCTGATGTGACTCTGACACACAGCGAAATCCCACTTCCAGCAAACACCTCACCCCAACCTAGTACAGCAGGAAATGACGCAGGCAGAACCGAAAAATAAGCAAAAGTAGTTGTTTGCTGTATGAGAAGAGTCAGTGACATTTAAACGTCCCCAAAAAATTGACATCTAAAGAGaacatttatattttattttgtgaCATTAATTTAATATTAAAATAGAGAGAATCACTCAAGCAGCCTTGACACACTGCAGCTACAGCTTAATGGAGCCAAGTAGATTACATAAGTGGTTTCCTGAGAGACATGAAAGGTTCAAAAGATCTTTCATTTTCATAAGTGCAGGGAGGAAGAGAACAAGCGCTGTGCTGAAAAATACAATTACTGTGTCACTCATTCCTCCAAGGAAACGACTGATTTGGGAGGTTAGCATGAGAACTCTGCCAACACACCTGTTTGCTTCATGGAAACtgcacctgtctgtctgacatACATTATTCACTATGGAAATGAATGCTGCGAGTTTTAAGGCACCTTTATTTCAAGGCGAAAATGACACAACAGAAAACCCTGGCACGCATGCGGGAAGAAGATTTCTCATGCTGTCTAAAAGTGCTCTCGTACATTAAGGAAATCTTTCAAGGCTCGGAGGATGCAAACCAACACAgtaacaacacaaacaaacaagaaccATCAGCTGCTAAATATTACACTTGAGGAACTACTTTGGAATGTGTTTATATTATAGATTTTCCAAAAAGTATCTGCTTAAATACCACAAATATAGATATTTTACTAaagataaaaacaaaacaaaaaaaacatatctatGTCCTTAAATATCGCTGTAAATCTCTTCAGGGGATGTCCTCTTACTGGACCTGAGAGAATGAACATAAAATAACAGAGTGGTAGATGAATGTACATTAGTTTAATGTCTACTGTGACATTTGTCTTAGGGAACTCATCAGGAATCTTCCATTTTCGCCCATGGGGCCACATTCAGTCCTCCAGGATGACATTCAGAGTAGGACCAGGAATAATAACAATACATTGTGAATACATACAGTGAggtccaaaagtatttggacaatgacaaatatatatttggggggggggggctctgtactccagcactttggatttgaaatgatacaatgactatgaagtGCAAACTGTCAGCTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU605925 False 1389 lncRNA 0.39 1 65796034 65797422
TU605926 True 1283 lncRNA 0.39 1 65796140 65797422

Neighbor

gene id symbol gene type direction distance location
LOC110526368 LOC106587203 coding upstream 3354 65774787 ~ 65792680 (+)
LOC110526366 LOC106587204 coding upstream 24644 65768783 ~ 65771390 (+)
LOC110526364 LOC106587206 coding upstream 215569 65575069 ~ 65580465 (+)
LOC110526363 LOC106587208 coding upstream 274436 65441092 ~ 65521598 (+)
LOC110526360 LOC106587210 coding upstream 355136 65434411 ~ 65440976 (+)
LOC110526370 LOC106562103 coding downstream 36337 65833759 ~ 65843569 (+)
LOC110526373 LOC106587200 coding downstream 150997 65948419 ~ 66035381 (+)
LOC110526374 LOC100196685 coding downstream 287697 66085119 ~ 66098315 (+)
dkk3a LOC106562112 coding downstream 530309 66327731 ~ 66332554 (+)
pkd1l2a LOC106587186 coding downstream 663301 66460723 ~ 66500000 (+)
G535020 NA non-coding upstream 153604 65635658 ~ 65642430 (+)
G534984 NA non-coding upstream 209127 65586195 ~ 65586907 (+)
G534982 NA non-coding upstream 211515 65584272 ~ 65584519 (+)
G534921 NA non-coding upstream 346012 65449775 ~ 65450022 (+)
G534920 NA non-coding upstream 346341 65449492 ~ 65449693 (+)
G535155 NA non-coding downstream 26947 65824369 ~ 65824684 (+)
G535156 NA non-coding downstream 27575 65824997 ~ 65825435 (+)
G535158 LOC106562099 non-coding downstream 29955 65827377 ~ 65827923 (+)
G535162 NA non-coding downstream 33613 65831035 ~ 65831237 (+)
G535166 NA non-coding downstream 46427 65843849 ~ 65844347 (+)
LOC110526356 LOC106587213 other upstream 634704 65065380 ~ 65178884 (+)
G534653 NA other upstream 678078 65113280 ~ 65169563 (+)
G534453 NA other upstream 948930 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1019698 64769099 ~ 64781704 (+)
LOC100750227 LOC106587244 other upstream 2456536 63338236 ~ 63549030 (+)
G535150 LOC106587155 other downstream 50201 65847623 ~ 65849441 (+)
G536406 NA other downstream 805363 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 1215798 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1306884 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1312254 67109676 ~ 67110628 (+)

Expression


Co-expression Network