G535925 (ctr9)


Basic Information

Item Value
gene id G535925
gene name ctr9
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65840709 ~ 65842247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU606812
CTCTGGGTTTGCGTTGCTTTTTGGGCCGTGAGCCTCCTTCCTCGTCATCGCTGCCATCGTCACCCCCTTTGTTGGATctcctcctcttcttgcgGCCCTCCTCCTCACTTCCGCTGCCacccttcctcttcttcctccttctcactggcaggtcctcatcagagccaTCGTTGACAAACTCATCAAAGTCACCCCCTTTCTTGCGTCGGCCGccacctttcttcttctctttcctttcctccttcATTCCATCGGCGAAGGAGAGCAGACCCTTGGTCTTCTCCACATACATGGCTCTCTGCTCCAGCAGCTTCTTCTGATCCTCTTCCTGCTTggttctcttctcctcTGTTCTTTATGCATCTGTTGGCGCAGGAAGTCCCTCTCCTGATCCTGTTTGGCCCggatctccttctcctcctcgtcCTGCTTCCTGGCCCGAGCCACGTGGTACTGGGCCTGACTCAGCAGGTCAGAGCATTGCCTGGCCTCAGTGGAGGCAAGCACTAGGTCGAACCTCATCTTGTCACCAGCCTTGGCAAGGTAGCTGAAATACCGGTGGGCCAGCTCCAGCTCTTTGACAGCACTGAGTACAGCCTTTAGGTTACTCTTCTCATCCTTCAGCACCAGAGTGGCCAGCCTCTGCAGCACCAGGGCCACGTTGAACATCAGCACCGTGTCACTGGGGGCCACGTGACGCGCCTGGGGACACAGCCAGCCACTTTTGTTTTCttccatttaacctttatttaactaggcaagtcagtttagaacaaattcttatttacaatgacggcctaccccggccaaacc

Function

symbol description
ctr9 Predicted to enable RNA polymerase II complex binding activity. Involved in heart development. Acts upstream of or within neural crest cell development; pigmentation; and somitogenesis. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component).

NR:

description
RNA polymerase-associated protein CTR9 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU606812 True 813 lncRNA 0.55 6 65840709 65842247

Neighbor

gene id symbol gene type direction distance location
LOC110526945 LOC106562099 coding downstream 12632 65826929 ~ 65828077 (-)
LOC110526367 LOC106587202 coding downstream 20372 65798073 ~ 65820337 (-)
LOC110526369 xlkd1 coding downstream 45041 65792819 ~ 65795668 (-)
LOC110526365 LOC106587205 coding downstream 75327 65600097 ~ 65765382 (-)
LOC110526361 LOC106587207 coding downstream 294261 65525672 ~ 65546448 (-)
LOC110526372 LOC106587155 coding upstream 2711 65844958 ~ 65851082 (-)
LOC100499618 LOC106587199 coding upstream 256070 66098317 ~ 66122139 (-)
LOC110526375 LOC106587197 coding upstream 337379 66179626 ~ 66181802 (-)
LOC110526376 LOC106587195 coding upstream 341980 66184227 ~ 66252048 (-)
LOC110526378 LOC106587194 coding upstream 417456 66259703 ~ 66271100 (-)
G535905 NA non-coding downstream 43274 65795989 ~ 65797435 (-)
G535798 NA non-coding downstream 241899 65598469 ~ 65598810 (-)
G535796 NA non-coding downstream 244215 65596266 ~ 65596494 (-)
G535791 NA non-coding downstream 254078 65586323 ~ 65586631 (-)
G535714 NA non-coding downstream 285728 65499956 ~ 65554981 (-)
G535934 NA non-coding upstream 16781 65859028 ~ 65859247 (-)
G535938 NA non-coding upstream 30029 65872276 ~ 65872479 (-)
G535946 NA non-coding upstream 40607 65882854 ~ 65883080 (-)
G535958 NA non-coding upstream 55286 65897533 ~ 65930393 (-)
G536093 NA non-coding upstream 272880 66115127 ~ 66116208 (-)
G534603 NA other downstream 955177 64855495 ~ 64895099 (-)
G534349 NA other downstream 1225913 64578798 ~ 64614796 (-)
G534201 NA other downstream 1341095 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 2015184 63823887 ~ 63944930 (-)
G536183 NA other upstream 420239 66262486 ~ 66276289 (-)
LOC110526379 LOC106587193 other upstream 434955 66277162 ~ 66326558 (-)
LOC110526387 LOC106587187 other upstream 658141 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 707120 66549367 ~ 66549974 (-)
G538277 NA other upstream 2300004 68142251 ~ 68144907 (-)

Expression


Co-expression Network