G536218


Basic Information

Item Value
gene id G536218
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66332709 ~ 66334248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU607140
CCTTAACTATGTTCACACAAGATTTAAACCTCAAAACAAAGAAACAAATTATTTTATTGGCATTTCTACTGTGAACAGCTTGTGGCAGGCAGCATTAGAAGCCCAGAGGAGCTCTGCTGGGCCCTGCAGTGTGGAGACCCAGTCAGCTGGTCCAGTAGGGTCTATGCCCTCTGGTCTCAGTCTATGAGAAGCAGCAGCAGGTATATATTGCCCCCAACCATCTCCCAAAACCACTGAGGGCTCCCGCCCCTCAAGCAATCAGCATTCACATCGTGCAGAAATAAAAACGACAGAGGAAATAAACATGTTTCTAAATTAACATAAGGTTAAATACAGACAAAATGTTTTTAATGTGTGCCAGAGGTCGCTCACAATAACATCAAAATAATTTACATTGAACAAAATGATGAGCGCCTAAAATTAGTCTACTTGGTGGTCTAGTTGCCATTTCCTTGGTAATTGGAAGACTAACACATATCAGTGAATCAGGAGGAAATGGCAGAGGCTGAGTTCCTATAAAGCAAAGGGGGTGGAGCAGCAGTAAGAGGAGTTTCCACAGGGATGCACACTGTGGCATTCTGGGAAAACAGCATAAATGTCagcaaatttaaaaaatgaccgCTTTATAGAATCAGAGATACAGAGGTCATTCAAATGTTGAGTGTGAACTACATATCAATTTGCCAAAGATGATAAACTGCAGTTTGGATTAAAGAAGATAAAGAACCTGGAAGAAAACTGAAAGTGAGTTTGTTGTTGTAGATACTCTTGGCTTTATACTCACAGTCTCTAAAGTGGGTGGGTGGGACGAGCATCGCTCTAGCCTGGTAAAATTTCAAATGTGGAGAATTTGAACCAGGTACATGTTCACAGATGGGTCAGGTAGTCTCTTGCTAGTCTGCAtaacagagggggagagcgagaaacCAAGTGctagagggagatgaggagaaaaAGTGTCGCAGAGAAGAGAGGAAACAGAAAGACATTTCTTTCCCCCTGGCTACACAGCTCTACCCTGATCGTGCACCCATGTCTGGAACATTTCCATTAAATTGATTTGTCGGTatggtatttttttttatttaattgaatAGCTTTTGCACTTCCCTTTAAACTTCACAGTACAATAAACTACAGTGCACAATATGATTTCTGAGCCACTCTTTCCCCTAGAGCTCAGATGGGAGGACGAAAGAGGGCGTGTGAAACGCACTGCTCTGGTGACGTCGTCGAGTCAACGTGGGGCCCCACGCCAGACAGGGTCCCCTGGCCGGGCCAAGCTACActgcggcaggcaggcaggccagccaGCTAACTGGGACGGGCCTCAGATGGGCCTCAGTCCTGCCCCGGGTCCTTGACCGGGCCCCCATCCAGGTAGATCTTAAGGGCCTTCTCCTTACGAGGTGAGTAACTGACCCGTTGGCCAGTCTTCAGCAGCCGGCTGCTCTCCTTCTTCATCAGCTCATTGCGTTCATCTTCCGACTGTTCCATAGGCTCCTCTGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU607140 True 1510 lncRNA 0.46 2 66332709 66334248

Neighbor

gene id symbol gene type direction distance location
dkk3a LOC106562112 coding upstream 155 66327731 ~ 66332554 (+)
LOC110526374 LOC100196685 coding upstream 234394 66085119 ~ 66098315 (+)
LOC110526373 LOC106587200 coding upstream 297328 65948419 ~ 66035381 (+)
LOC110526370 LOC106562103 coding upstream 489140 65833759 ~ 65843569 (+)
LOC110526368 LOC106587203 coding upstream 540029 65774787 ~ 65792680 (+)
pkd1l2a LOC106587186 coding downstream 126475 66460723 ~ 66500000 (+)
LOC110526388 LOC106587185 coding downstream 172663 66506911 ~ 66565353 (+)
LOC110526389 LOC106587184 coding downstream 241242 66575490 ~ 66591573 (+)
LOC110526391 LOC106587183 coding downstream 258333 66592581 ~ 66596719 (+)
LOC110526390 LOC106587182 coding downstream 263530 66597778 ~ 66602137 (+)
G536192 NA non-coding upstream 48056 66283077 ~ 66284653 (+)
G536188 NA non-coding upstream 55957 66276551 ~ 66276752 (+)
G536174 NA non-coding upstream 71265 66256684 ~ 66261444 (+)
G535358 NA non-coding upstream 185854 66146585 ~ 66146855 (+)
G535194 NA non-coding upstream 402308 65897509 ~ 65930401 (+)
G536220 LOC106587191 non-coding downstream 5865 66340113 ~ 66340522 (+)
G536329 NA non-coding downstream 80168 66414416 ~ 66437171 (+)
G536348 NA non-coding downstream 112757 66447005 ~ 66449264 (+)
G536371 NA non-coding downstream 154317 66488565 ~ 66492463 (+)
G536392 NA non-coding downstream 237811 66572059 ~ 66572392 (+)
G535150 LOC106587155 other upstream 483268 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1171379 65065380 ~ 65178884 (+)
G534653 NA other upstream 1214753 65113280 ~ 65169563 (+)
G534453 NA other upstream 1485605 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1556373 64769099 ~ 64781704 (+)
G536406 NA other downstream 268537 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 678972 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 770058 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 775428 67109676 ~ 67110628 (+)
G537606 NA other downstream 1420308 67754556 ~ 67756618 (+)

Expression


Co-expression Network