Gene
RNA
| Item | Value |
|---|---|
| gene id | G536348 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 66447005 ~ 66449264 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| beta,beta-carotene 15,15'-dioxygenase-like |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU607306 | True | 839 | lncRNA | 0.41 | 2 | 66447005 | 66449264 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dkk3a | LOC106562112 | coding | upstream | 114451 | 66327731 ~ 66332554 (+) |
| LOC110526374 | LOC100196685 | coding | upstream | 348690 | 66085119 ~ 66098315 (+) |
| LOC110526373 | LOC106587200 | coding | upstream | 411624 | 65948419 ~ 66035381 (+) |
| LOC110526370 | LOC106562103 | coding | upstream | 603436 | 65833759 ~ 65843569 (+) |
| LOC110526368 | LOC106587203 | coding | upstream | 654325 | 65774787 ~ 65792680 (+) |
| pkd1l2a | LOC106587186 | coding | downstream | 11459 | 66460723 ~ 66500000 (+) |
| LOC110526388 | LOC106587185 | coding | downstream | 57647 | 66506911 ~ 66565353 (+) |
| LOC110526389 | LOC106587184 | coding | downstream | 126226 | 66575490 ~ 66591573 (+) |
| LOC110526391 | LOC106587183 | coding | downstream | 143317 | 66592581 ~ 66596719 (+) |
| LOC110526390 | LOC106587182 | coding | downstream | 148514 | 66597778 ~ 66602137 (+) |
| G536329 | NA | non-coding | upstream | 9834 | 66414416 ~ 66437171 (+) |
| G536220 | LOC106587191 | non-coding | upstream | 106483 | 66340113 ~ 66340522 (+) |
| G536218 | NA | non-coding | upstream | 112757 | 66332709 ~ 66334248 (+) |
| G536192 | NA | non-coding | upstream | 162352 | 66283077 ~ 66284653 (+) |
| G536188 | NA | non-coding | upstream | 170253 | 66276551 ~ 66276752 (+) |
| G536371 | NA | non-coding | downstream | 39301 | 66488565 ~ 66492463 (+) |
| G536392 | NA | non-coding | downstream | 122795 | 66572059 ~ 66572392 (+) |
| G536393 | NA | non-coding | downstream | 123977 | 66573241 ~ 66573496 (+) |
| G536394 | NA | non-coding | downstream | 124292 | 66573556 ~ 66573851 (+) |
| G536400 | NA | non-coding | downstream | 134094 | 66583358 ~ 66587117 (+) |
| G535150 | LOC106587155 | other | upstream | 597564 | 65847623 ~ 65849441 (+) |
| LOC110526356 | LOC106587213 | other | upstream | 1285675 | 65065380 ~ 65178884 (+) |
| G534653 | NA | other | upstream | 1329049 | 65113280 ~ 65169563 (+) |
| G534453 | NA | other | upstream | 1599901 | 64790322 ~ 64847104 (+) |
| LOC110526344 | LOC106587225 | other | upstream | 1670669 | 64769099 ~ 64781704 (+) |
| G536406 | NA | other | downstream | 153521 | 66602785 ~ 66604053 (+) |
| G536995 | zfhx3 | other | downstream | 563956 | 67013220 ~ 67018653 (+) |
| G537029 | zfhx3 | other | downstream | 655042 | 67104306 ~ 67104908 (+) |
| G537032 | LOC106587324 | other | downstream | 660412 | 67109676 ~ 67110628 (+) |
| G537606 | NA | other | downstream | 1305292 | 67754556 ~ 67756618 (+) |
