G536394


Basic Information

Item Value
gene id G536394
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66573556 ~ 66573851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU607358
acataacatATTTGATTTGGtcaaataagtattcagaccctttttctatgagactcaaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttcttggacattgaccaagttattattattgtagctgtctaccacagcatattggagtTGAAATTAAATAAGGAGCTGAAAGTGTAGAAGttcatttgagggtatttacATCCAAATCGGGTGACCGGTGTAGGAATTATAGCACTTTTTATATGTGCCCCCCTTTTTTAAGGGACTAAAAGTAATTGGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU607358 True 296 lncRNA 0.36 1 66573556 66573851

Neighbor

gene id symbol gene type direction distance location
LOC110526388 LOC106587185 coding upstream 8203 66506911 ~ 66565353 (+)
pkd1l2a LOC106587186 coding upstream 73556 66460723 ~ 66500000 (+)
dkk3a LOC106562112 coding upstream 241002 66327731 ~ 66332554 (+)
LOC110526374 LOC100196685 coding upstream 475241 66085119 ~ 66098315 (+)
LOC110526373 LOC106587200 coding upstream 538175 65948419 ~ 66035381 (+)
LOC110526389 LOC106587184 coding downstream 1639 66575490 ~ 66591573 (+)
LOC110526391 LOC106587183 coding downstream 18730 66592581 ~ 66596719 (+)
LOC110526390 LOC106587182 coding downstream 23927 66597778 ~ 66602137 (+)
LOC118965117 NA coding downstream 26368 66600219 ~ 66600295 (+)
LOC118965114 NA coding downstream 27086 66600937 ~ 66601020 (+)
G536393 NA non-coding upstream 60 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 1164 66572059 ~ 66572392 (+)
G536371 NA non-coding upstream 81093 66488565 ~ 66492463 (+)
G536348 NA non-coding upstream 124292 66447005 ~ 66449264 (+)
G536329 NA non-coding upstream 136385 66414416 ~ 66437171 (+)
G536400 NA non-coding downstream 9507 66583358 ~ 66587117 (+)
G536409 NA non-coding downstream 74706 66648557 ~ 66651510 (+)
G536585 NA non-coding downstream 354714 66928565 ~ 66932555 (+)
G536994 NA non-coding downstream 438320 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 462778 67036629 ~ 67036990 (+)
G535150 LOC106587155 other upstream 724115 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1412226 65065380 ~ 65178884 (+)
G534653 NA other upstream 1455600 65113280 ~ 65169563 (+)
G534453 NA other upstream 1726452 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1797220 64769099 ~ 64781704 (+)
G536406 NA other downstream 28934 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 439369 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 530455 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 535825 67109676 ~ 67110628 (+)
G537606 NA other downstream 1180705 67754556 ~ 67756618 (+)

Expression


Co-expression Network