G536409


Basic Information

Item Value
gene id G536409
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66648557 ~ 66651510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU607373
acccttgaatgagtaggtgtgtccaaatttgacGGGTACTGTACAAGCCAACTTGACATTTTGTAACATGACTCACACTAATATTACGTTACAGTACAACGTTTTAAAGCTTAGTGATTTATTACAGATTAAGCAATGTGACTTACACACATGTTATGTCAATCTCAGGTTTATAGTGACCTTATGCAGGCATGATGGCAGAGCATTCAAATGAAATTTTACAGAAGTGTATACATGATAAAGAAGTCAACACGTACAAacaaatatatgtacagtgtaaATGAATGATAAAGTTCGACATCAAGATAAATCAGATCTTTATCAACTGTTATGCCCATTACCTCCATATGAAGCATACCTTAGGGATTTATCTTTTTCTCAACCTGACCTATCTGGAGCCTTAGCCAGTTACTTTTCTTAATTGAATTAACGAGGAACATTTTAAATGGGGCTCTTCGTGGTGTTTGTGTCACAAGGCTGTGAACGATATTGTAGGTCTTTCAAAAACGAAATCTTATTCCAATGCGAAAACCCTGCCATCGCTCATGTGAAAGACCTCACTGCACTGTCTAGTAAATAATCTAAATACGGTGGAATTGATATGATTTCTATTGTTTGACGAGTGCAAATGTCACAGGAGTACACTGACATTAATAAGAAACCAGAGAGTGGGATCATGGCCTTGTATTCAcattgacttgtttggatgagATGCGGCTGACTTATGGTAAGCAGCTTTACATGCACATCCCTCCATGATTAATATGTCCCGTAACCATTATTTGTTCTCTCTGTTGACACTTTGACTTGTTGATTGTATAAATCATGGGTAAGAAGTCTTGCACGTAGTTCCATAAACTTCTTCTGCTAAAAATTCTACTGACGTAGTTTAGGTGCATCAGGTATCTACTTCAGATATGATGCAAACAGAGGTAACCTGAATCACTGAAATCGTATTATTTTGTCTGCCCATAttttttacatacactaagaatAACACCTAAAAACAGGTTGCATTCAGTATAAAGATTGCAAATGTTTGCTCATAATGGAGAAATACGAGGAAGATTACATCACAGTTGTCTGGGATATTGTAAAACTGGCTCTAATCCTTATCAATACCTTTCTCTGGACAGTGACAACCACATGTAGGCTGGAATTCAGTTGAACCCGCCATAGATGGTCAATTAGCATAATATGGGTTTTTAGATTTTGATGCCAGTCCGTGCCATTGCCTCTGTCTCCTTTGTTGATGCGACTTTGTAATTATCAAGTTCACTTTGGCTTCTCCCTCAATGCTTGCATCTCTCCCAGGTGGCCCATGTGCTCTTATGTACATAACTGTGGCTAAACTCCCCCGGTACAGTGCTCCTGTGTGCTGTGGTCTGAGCTCCTTTGAAGAACAGTGAGTGTGTATCTGTCACTAAGGACCACAAGCTTCGGCCTATTGATTCAGGACTCCCAGATCTGGAATCCTCCTTGATCAGCTGAATGTAAATAACCCTGGATGGACTTTCATCTCCACACTGGGGCTCTGCAGTGGGACGTGTAGGATGGGGAAATGGATGTAGAACATTTGCCAATGTTCTGTTGGACTGAGTTCTGACATCAATGGTAATATATTGAAGTACTTTATATTTATTAAATTAatgatttgtttgtttttgtttggatATCTACTATGTGTTTGTTTGAATATGATGACACCATTTCTCAAGATGGCATAATGCCATGGATTTATTCATCACATGAATGGATATCTCATTTTTAGGATTACTGTTGTGCAATGGCAGGAAACCTTATCTATCAGATCTATATTGAGAAATGTATGAATCATTGGCAAGATGATGGGGTACACTGTTATCTGTTACAGCCCCTTGGTCCATATCTTTATTGCACAAGCTAAAACAGTGTGCATTTTCATAAAATTGGCTTGTGTGCAGCCCAACATATGCTCACACTAAGACCATACATACATTACACACTCCGAGCAACAGCAAGTGATATCATGCTGATATGAATCAGTATTCCTGTTCCTGAGGGGGAACGGGATTTGAATACCATATGCTCAAGTCACGCACCTTCCTGTTGTTTCtttgctgtgctgtactgttgtTCCCACCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCGTGGACACCATGGTTCATGATTTAATGTTGCCCTCAGGCACAAAGCACTCTCCATCAACTCAAATCATCCTTTGCTTAGTTCATTTTCAGAATAAACCCTTTAGACCAAATGCACAGTCAGTTGCAGGTATTGCTAACCCTGATGCATACTGTATCTAGCGGTATTGATTTCAATGGTGGATGTCTCCTTTAAAATATTTATGCAGGGAGAATGACTGGTTTTAAATGAGCACTGCAAAGAGTGCATAATCTGAGGTATTTATTTTGCATTCACCACTGACAAACATGGGCTTTAAACACTACTGTACTATGGGTGGAAGGTAATGCAGGCTAGTCTATTGCCCTGCTGTGTATTCCCTAAACCACTGGATGATTTTGAGGTCATAGATATATTTTATTTCTAAAAAGAGAATTCATTGCATGCTTACTTCTGTTGTTAAGATGTGTTGTACATTCCTTTGGAGTACGTTATGCTGATAGGCAAGCCTGCATTTGCACAAACCTCTGCTCATGTTGTGGATGCTCTCTTTATCTTGCATTTAGGCCAATAAATCCAGTCAACTGCATGATAGTGTCTGTGATGTCTCATCCTTGTGAAAAAAAAGTGGAAATATTCGCCCCTATTCTTCTTCCATGTTTTTGAAAAAAACTAAATAAAGCTTTAGTATTTATTGCCATTTG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU607373 True 2894 lncRNA 0.39 2 66648557 66651510

Neighbor

gene id symbol gene type direction distance location
LOC110526392 LOC106587181 coding upstream 1134 66609230 ~ 66647423 (+)
LOC110526390 LOC106587182 coding upstream 46420 66597778 ~ 66602137 (+)
LOC118965116 NA coding upstream 46788 66601685 ~ 66601769 (+)
LOC118965114 NA coding upstream 47537 66600937 ~ 66601020 (+)
LOC118965117 NA coding upstream 48262 66600219 ~ 66600295 (+)
LOC110526947 LOC105029748 coding downstream 68298 66719808 ~ 66720441 (+)
LOC110526393 LOC106587180 coding downstream 97306 66748816 ~ 66753440 (+)
LOC110526948 LOC106562086 coding downstream 104820 66756330 ~ 66776332 (+)
LOC110526401 LOC106587347 coding downstream 876632 67528142 ~ 67544856 (+)
LOC110526949 mald3 coding downstream 992304 67643814 ~ 67644573 (+)
G536400 NA non-coding upstream 61440 66583358 ~ 66587117 (+)
G536394 NA non-coding upstream 74706 66573556 ~ 66573851 (+)
G536393 NA non-coding upstream 75061 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 76165 66572059 ~ 66572392 (+)
G536371 NA non-coding upstream 156094 66488565 ~ 66492463 (+)
G536585 NA non-coding downstream 277055 66928565 ~ 66932555 (+)
G536994 NA non-coding downstream 360661 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 385119 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 388850 67040360 ~ 67040589 (+)
G537007 NA non-coding downstream 396779 67048289 ~ 67048510 (+)
G536406 NA other upstream 44504 66602785 ~ 66604053 (+)
G535150 LOC106587155 other upstream 799116 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1487227 65065380 ~ 65178884 (+)
G534653 NA other upstream 1530601 65113280 ~ 65169563 (+)
G534453 NA other upstream 1801453 64790322 ~ 64847104 (+)
G536995 zfhx3 other downstream 361710 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 452796 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 458166 67109676 ~ 67110628 (+)
G537606 NA other downstream 1103046 67754556 ~ 67756618 (+)
G537617 atxn1l other downstream 1115246 67766756 ~ 67767613 (+)

Expression


Co-expression Network